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Report for CCDS18562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18562.1 Public Mus musculus 4 Or10ak12 23 108 98 CCDS HistoryNCBI Gene:435804Re-query CCDS DB by CCDS ID:18562.1Re-query CCDS DB by GeneID:435804See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219094.1 ENSMUSP00000151219.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219094.1Link to Ensembl Protein Viewer:ENSMUSP00000151219.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219094Re-query CCDS DB by Protein ID:ENSMUSP00000151219
Original member Current member NCBI NM_207703.1 NP_997586.1 Accepted alive Link to Nucleotide Sequence:NM_207703.1Link to Protein Sequence:NP_997586.1Re-query CCDS DB by Nucleotide ID:NM_207703Re-query CCDS DB by Protein ID:NP_997586Link to BLAST:NP_997586.1

Chromosomal Locations for CCDS 18562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118808855 118809862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGTGTCAGACAACACATAGAATAATGGATTCTCTTACAGTCTCTACCATGTGGAGGATGTCAGGACAAA
ACCAAAGTTGGGTTTCTGAGTTCATCCTGCTTGGCTTCTCCAGTGATTCCACAACCAACAGCATCCTCTT
CATTGTCTTCCTTCTCATCTACCTGAGCTCAGTCCTGGGCAACGGGCTCATCATCATGCTGGTATGCCTG
GACACACAGCTGCACACTCCCATGTACTTCTTCCTCTCTACCCTCTCCCTGTTGGATATGGGCTATGTCA
CCACCACCATGCCCCAGATGTTGGTGCATCTTCTTGCTCACTCTCAGACCATCTCCTTTGCTAGCTGCTG
GCTGCAGATGTACGTGTTTGGTGCCCTGGGTATGACAGAGAGCATCCTCTTTGTTGTCATGGCTTATGAC
CGGTATGTGGCCATTTGCTATCCACTGCGCTATACTGTTATCCTCAACTGGGACCTGTGCATACGTTTGG
CAGCAGGGACTTGGATCTGTGGTTTCTTTTCCTCTTTATTGAATACTTTCTTCACCATGAGTCTGCCATA
TTGTGGGCCCAACAGGGTCAACCACTACTTGTGTGAAGGTCCTTCAGTGCGTAGCTTGGCTTGCATGGAT
ACTCACTTTGTAGAGATGGTGGACTTGGTCTTGAGTGTTTTTGTAGTTGTTACTCCAATTTCCCTCATTG
TGGCTTCCTACATTCATATTGCCAAGGCAATTCTCAAGATTAAGTCCACCCAGGGGCGCTGCAAGGCTTT
CTCTACCTGTGCCTCCCACCTGACTGTGGTTACACTCTTCTATCTTCCTGCTACTTACATCTACATGAGA
CCCAACTCCAGCAGCTCTTCTGAAAGAGACAAGCAGATCTCACTCTTTTATACTGCTTTTACACCATTGC
TCAACCCTGTGGTCTACAGTCTGAGAAACAAGGACATCAAGAGGGCATTTCTCAAGGTGATGTTTTATGG
CAGGTGGACCCGTGGACCACAATGGTGA

Translation (335 aa):
MCQTTHRIMDSLTVSTMWRMSGQNQSWVSEFILLGFSSDSTTNSILFIVFLLIYLSSVLGNGLIIMLVCL
DTQLHTPMYFFLSTLSLLDMGYVTTTMPQMLVHLLAHSQTISFASCWLQMYVFGALGMTESILFVVMAYD
RYVAICYPLRYTVILNWDLCIRLAAGTWICGFFSSLLNTFFTMSLPYCGPNRVNHYLCEGPSVRSLACMD
THFVEMVDLVLSVFVVVTPISLIVASYIHIAKAILKIKSTQGRCKAFSTCASHLTVVTLFYLPATYIYMR
PNSSSSSERDKQISLFYTAFTPLLNPVVYSLRNKDIKRAFLKVMFYGRWTRGPQW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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