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Report for CCDS36355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36355.1 Public Mus musculus 11 Efcab3 23 108 98 CCDS HistoryNCBI Gene:70894Re-query CCDS DB by CCDS ID:36355.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021029.5 ENSMUSP00000021029.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021029.5Link to Ensembl Protein Viewer:ENSMUSP00000021029.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021029Re-query CCDS DB by Protein ID:ENSMUSP00000021029
Original member NCBI NM_001081046.1 NP_001074515.1 Updated not alive Link to Nucleotide Sequence:NM_001081046.1Link to Protein Sequence:NP_001074515.1Re-query CCDS DB by Nucleotide ID:NM_001081046Re-query CCDS DB by Protein ID:NP_001074515
Current member NCBI NM_001081046.2 NP_001074515.1 Accepted alive Link to Nucleotide Sequence:NM_001081046.2Link to Protein Sequence:NP_001074515.1Re-query CCDS DB by Nucleotide ID:NM_001081046Re-query CCDS DB by Protein ID:NP_001074515Link to BLAST:NP_001074515.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074515.1 432 Q80X60 432 100% 0 0

Chromosomal Locations for CCDS 36355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 105093585 105093652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105095845 105095921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105099914 105100057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105102212 105102283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105106347 105106467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105108769 105108950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105109251 105109435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105111790 105111912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105117068 105117394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGCAGTTTCAGAAATTAAAGCCACGATGAAGCTAAAGCCCTTAAAAGCACCTGTCTTTCACAAGAGAG
AT
AAAGATTTGCGAGGATCTTTCTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCACAACT
T
GAAGCCTTCCGTAATGCTTACAACTTCTTCACCAAGGATAGAACTGGCTGTATTGATTCACACGGATTG
ATA
AGCACCATAGCAAAACTGGGAATGAATCTAAACACGTACGATATCTACAATGAATTAAAATGTGCTG
AT
CTCGACAGGGACGGTAAGATCAACTTCTCAGATTTTATAAATGTGTTGACAGATAAGAAACTCTTCCT
C
AAGGCTGTGGTTCCAGAAAAGAAAATATGCTTAGATTTAGCTAACAACCCAGGAATCTTGTTGTTTGAA
ATC
CTATCAAAATTTGTAGAAACCTCGTCCCTGCACAGAAAGGATATAATAGAGCTAGTAAGCTATTTCC
GA
AAAAGGTTCCAGGAGAGCCACTCAGAAATAATGTGGAGTTCGTATGGGAGAAGGGGCCTAAAGTCAGA
G
ATCTGCTCTCCCCCTCGCTCGAGCACTGCTGCCTTTGCCAACTCTGCTAGGATCTCCATAATGAAAGAA
AGG
GATTTGTATAAGTTTCTCGAAGCCCTCAAACGGTGTAATCTCCGTACAGATAGCCCATACTCAAAAA
TA
CCTGTGTTTCCGTTGTTTCCTGATGTGGATGGGACGGTGATGGGAAAACCATTTAAAGACACACAAAA
A
ATAGAGATGCTAAGGAGAAAGGAGCCTCTGACTTTCTTTGAGGACTATTTTTTCAATAAAAGAGATTGG
AAA
ACACAGGCCATGAATGTGAAACCTCTCAAGTCTGCCTCAGGCTATTCAGATGACATCTTAGCCATTG
AC
CACCTGTTCAAGAAAAAGCAACATTGGACTGTGACTGATGCGGCTGCTATCAAACAGCATGTAAAGAA
A
GCCACGGAGAGTTATAACTTAGGAATTGCCCTTGACCACCGGAAAGAAATGCTGAACCTCTGGAAGAAG
ATT
CGAGGGGATTTGGTTGGGATCGAAAGCAACAATGAGTCCTTTTACAACACCTTTTCGACCTACACCT
GG
TCCTGGAACGTCTGCCAAGAGCTGCTCTCCGCTAAGGACCTCCGCTTGCACGACGCCAGCATGAACAA
G
AGTTCCCCCTCCAACTCTGGGTTATCTTCCCCATCGGACTTCAGTGAGTCTGACCCGGAGACGGGGAGG
AAG
AGGAAACGGAAAAGTTCCAGAGGGTTTCGGCAATGA


Translation (432 aa):
MAVSEIKATMKLKPLKAPVFHKRDKDLRGSFSDHLKHKESKLSPAQLEAFRNAYNFFTKDRTGCIDSHGL
I
STIAKLGMNLNTYDIYNELKCADLD
RDGKINFSDFINVLTDKKLFLKAVVPEKKICLDLANNPGILLFE
I
LSKFVETSSLHRKDIIELV
SYFRKRFQESHSEIMWSSYGRRGLKSEICSPPRSSTAAFANSARISIMKE
R
DLYKFLEALK
RCNLRTDSPYSKIPVFPLFPDVDGTVMGKPFKDTQKIEMLRRKEPLTFFEDYFFNKRDW
K
TQ
AMNVKPLKSASGYSDDILAIDHLFKKKQHWTVTDAAAIKQHVKKATESYNLGIALDHRKEMLNLWKK
I
RGDLVGIESNNESFYNTFSTYTWSWNVCQELLSAKDLRLHDASMNKSSPSNSGLSSPSDFSESDPETGR
K
RKRKSSRGFRQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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