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Report for CCDS49876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49876.1 Public Mus musculus 16 Tmem30c 23 108 98 CCDS HistoryNCBI Gene:71027Re-query CCDS DB by CCDS ID:49876.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023434.14 ENSMUSP00000023434.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023434.14Link to Ensembl Protein Viewer:ENSMUSP00000023434.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023434Re-query CCDS DB by Protein ID:ENSMUSP00000023434
Original member Current member EBI ENSMUST00000119407.7 ENSMUSP00000112989.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119407.7Link to Ensembl Protein Viewer:ENSMUSP00000112989.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119407Re-query CCDS DB by Protein ID:ENSMUSP00000112989
Original member Current member NCBI NM_027651.1 NP_081927.1 Accepted alive Link to Nucleotide Sequence:NM_027651.1Link to Protein Sequence:NP_081927.1Re-query CCDS DB by Nucleotide ID:NM_027651Re-query CCDS DB by Protein ID:NP_081927Link to BLAST:NP_081927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081927.1 342 Q9D4D7 342 100% 0 0

Chromosomal Locations for CCDS 49876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57266410 57266594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57269999 57270208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57276123 57276263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57276703 57276790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57277652 57277753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57281261 57281371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57290716 57290907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGAGATGATGCCCCAGTATGACCTGTCCAGACTGCCAGAAAACACAGCATTGAAACAGCAAACGTTGC
CCACCCAGCAGCTAAATCTATCTGCCTCGGTGGTCCTCTCTATCTTTTTCATCACAGGAGGATTCTGCCT
CTCTATAGGCATCATCCTTCTGTTGTCTGCAAAGAGCACCAAGAAAATTGAGATAAATTACACAAAGACG
TGTGCGAATTGCGCTCAGCTCCGGGAAAATAGTTCTAATTTTGACAAAGCATGCAACTGTTCTCTTCCTT
TTTACCTTCCGGAGAAAATGGAGGGTGATGTTTATATGTACTACAAACTGTATGGTTTCTATCAGAATCT
CTATCAATATATCTTATCAAGAAGCAATAGCCAATTGGTGGGTAAGGATATTTGGGATACTACGAACTGT
GATCCGTTCCAAGTGTCCCACAATGACACTCCCATCATTCCTTGTGGTGCAATTGCCAACAGCATATTCA
ATGATACCATAACTCTTTCATACAACCTGAATTCATCTACACAGATAGAAGTCCCAATGCTAAAGAGTGG
GCTTACATGGTGGACAGATAAGTATGTCAAATTTCGGAATCCAAGATCCAGTAACTTCACCAGTACATTT
GCAGGAAGTTCGAAGCCTCTGCACTGGGCCAAACCTATCTATGAACTGGATCTAGATGACCCAGGGAACA
ATGGCTTTCTCAATGAGGACTTCATTGTGTGGATGCGGACGGCTGCCTTTCCCACTTTCAAAAAACTGTA
CCGCCGACTGAAGCGCGTGCACGCCTTCGCTGAAGGCTTACCTGCTGGTAACTACAGTTTGAGCATCTCC
TACAACTTTCCAGTAACCATGTTCCAAGGAGAAAAGTCCATTGTCCTTTCCACTCTGACATGGATCGGGG
GAGGAGGCCTTTTCTTGGGGCTGACTTACACAGTGACGGGGGCACTGACGCTGTTGGCCTCTTTTGCCAT
CCTGACGATTCACTTGATGCTGAAAAGGAGTAAACTGAATTTCCTGTAG

Translation (342 aa):
MEMMPQYDLSRLPENTALKQQTLPTQQLNLSASVVLSIFFITGGFCLSIGIILLLSAKSTKKIEINYTKT
CANCAQLRENSSNFDKACNCSLPFYLPEKMEGDVYMYYKLYGFYQNLYQYILSRSNSQLVGKDIWDTTNC
DPFQVSHNDTPIIPCGAIANSIFNDTITLSYNLNSSTQIEVPMLKSGLTWWTDKYVKFRNPRSSNFTSTF
AGSSKPLHWAKPIYELDLDDPGNNGFLNEDFIVWMRTAAFPTFKKLYRRLKRVHAFAEGLPAGNYSLSIS
YNFPVTMFQGEKSIVLSTLTWIGGGGLFLGLTYTVTGALTLLASFAILTIHLMLKRSKLNFL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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