NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8504.1 Public Homo sapiens 12 B4GALNT3 24 110 108 CCDS HistoryNCBI Gene:283358Re-query CCDS DB by CCDS ID:8504.1Re-query CCDS DB by GeneID:283358See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266383.10 ENSP00000266383.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266383.10Link to Ensembl Protein Viewer:ENSP00000266383.5Re-query CCDS DB by Nucleotide ID:ENST00000266383Re-query CCDS DB by Protein ID:ENSP00000266383
Original member Current member NCBI NM_173593.4 NP_775864.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173593.4Link to Protein Sequence:NP_775864.3Re-query CCDS DB by Nucleotide ID:NM_173593Re-query CCDS DB by Protein ID:NP_775864Link to BLAST:NP_775864.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775864.3 998 Q6L9W6 998 100% 0 0

Chromosomal Locations for CCDS 8504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 460377 460545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 535166 535269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 536218 536295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 544339 544434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 544882 544972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 545369 545469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 546646 546713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 548024 548102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 548231 548297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 549769 549912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 550922 551031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 552063 552163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 552467 552528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 553194 553983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 556547 556866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 557608 557761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 558016 558088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 558508 558661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 559295 559421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 561343 561451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2997 nt):
ATGGGGAGCCCCCGGGCCGCGCGGCCCCCGCTGCTCCTGCGCCCGGTGAAGCTGCTGCGGAGGCGCTTCC
GGCTGCTGCTGGCGCTCGCCGTGGTGTCTGTGGGGCTCTGGACTCTGTATCTGGAACTGGTGGCGTCGGC
CCAGGTCGGCGGGAACCCCCTGAACCGGAGGTACGGCAGCTGGAGAGAACTGGCCAAGGCTCTGGCCAGC
AGGAACATTCCAGCTGTGGATCCACACCTCCAGTTCTACCATCCCCAGAGGCTGAGCCTCGAGGACCACG
ACATTGACCAAGGGGTGAGCAGTAACAGCAGCTACTTGAAGTGGAACAAGCCTGTCCCCTGGCTCTCAGA
GTTCCGGGGCCGTGCCAACCTGCATGTGTTTGAAGACTGGTGTGGCAGCTCTATCCAGCAGCTCAGGAGG
AACCTGCATTTCCCACTGTACCCCCATATTCGCACAACCCTGAGGAAGCTTGCTGTGTCCCCCAAATGGA
CCAACTATGGCCTCCGCATCTTTGGCTACCTGCACCCCTTTACTGATGGGAAAATCCAGTTTGCCATTGC
TGCAGATGACAACGCGGAGTTCTGGCTGAGCCTCGATGACCAGGTCTCAGGCCTCCAGCTGCTGGCCAGT
GTGGGCAAGACTGGAAAGGAGTGGACCGCCCCGGGAGAGTTTGGGAAATTTCGGAGCCAAATTTCCAAGC
CGGTGAGCCTGTCAGCCTCCCACAGGTACTACTTCGAGGTGCTGCACAAGCAGAATGAGGAGGGCACCGA
CCACGTGGAAGTTGCATGGCGACGGAACGACCCTGGAGCCAAGTTCACCATCATTGACTCCCTCTCCCTG
TCCCTCTTCACAAATGAGACGTTCCTACAGATGGATGAGGTGGGCCACATCCCACAGACAGCAGCCAGCC
ACGTGGACTCCTCCAACGCTCTTCCCAGGGATGAGCAGCCGCCCGCTGACATGCTTCGGCCTGACCCCCG
GGACACCCTCTATCGAGTGCCTCTGATCCCCAAGTCGCATCTCCGCCACGTCCTGCCTGACTGTCCCTAC
AAACCCAGCTATCTGGTGGATGGGCTTCCTCTGCAGCGCTACCAGGGACTCCGGTTTGTTCATCTGTCTT
TTGTTTACCCCAATGACTATACCCGCCTGAGCCACATGGAGACCCACAATAAATGTTTCTACCAGGAAAA
CGCCTACTACCAAGACCGGTTCAGCTTTCAGGAGTACATCAAGATTGACCAGCCTGAGAAGCAGGGGCTG
GAGCAGCCAGGTTTTGAGGAAAACCTTCTAGAAGAGTCCCAGTATGGGGAAGTGGCAGAGGAGACCCCTG
CCTCCAACAACCAGAATGCCAGGATGCTTGAGGGAAGACAGACACCTGCCTCCACCCTGGAGCAAGATGC
CACTGACTACCGCCTCCGAAGCCTGCGGAAACTCCTGGCTCAGCCCCGGGAGGGCCTGCTGGCCCCCTTC
TCCAAGCGGAACTCCACAGCGTCCTTCCCAGGGAGGACCAGCCACATTCCAGTGCAGCAGCCAGAGAAGA
GGAAGCAAAAACCCAGCCCTGAGCCCAGCCAAGATTCACCTCATTCCGACAAGTGGCCTCCTGGGCACCC
TGTGAAGAACCTGCCTCAGATGAGGGGGCCCAGGCCCAGGCCCGCTGGTGACAGCCCCAGGAAGACTCAG
TGGCTGAACCAGGTGGAGTCGTACATCGCAGAGCAGAGACGGGGTGACAGGATGCGGCCTCAGGCCCCTG
GAAGGGGCTGGCATGGGGAGGAGGAAGTGGTGGCGGCCGCAGGCCAGGAAGGACAAGTGGAGGGAGAGGA
AGAGGGGGAAGAAGAGGAGGAGGAAGAGGATATGAGTGAGGTGTTCGAGTACGTACCTGTGTTTGACCCG
GTAGTAAACTGGGACCAGACCTTCAGTGCCCGGAATCTCGACTTCCAAGCCCTGAGGACTGACTGGATCG
ATCTGAGCTGTAACACATCTGGCAACCTGCTGCTTCCAGAGCAGGAAGCTCTGGAGGTCACGCGAGTCTT
CTTGAAGAAGCTCAACCAGAGGAGCCGGGGGAGGTACCAGCTACAGCGCATTGTGAACGTGGAAAAGCGT
CAGGACCAGCTACGTGGGGGTCGCTACCTCCTGGAGCTTGAACTGTTGGAACAAGGCCAGCGCGTGGTGC
GGCTCTCGGAGTATGTGTCTGCACGAGGCTGGCAGGGCATCGATCCAGCTGGTGGGGAGGAGGTCGAGGC
CCGGAACCTGCAAGGCCTGGTCTGGGACCCACACAACCGTAGGAGACAGGTCCTGAATACCCGGGCCCAA
GAGCCCAAGCTGTGCTGGCCTCAGGGTTTCTCCTGGAGTCACCGAGCCGTGGTCCACTTCGTCGTGCCTG
TGAAGAACCAGGCACGCTGGGTACAGCAATTCATCAAAGACATGGAAAACCTGTTCCAGGTCACCGGTGA
CCCACACTTCAACATCGTCATCACTGACTATAGCAGTGAGGACATGGATGTTGAGATGGCACTGAAGAGG
TCCAAGCTGCGGAGCTACCAGTACGTGAAGCTAAGTGGAAACTTTGAACGCTCAGCTGGACTTCAGGCTG
GCATAGACCTCGTGAAGGACCCGCACAGCATCATCTTCCTCTGTGACCTCCACATCCACTTCCCAGCTGG
AGTCATCGATGCCATTCGGAAGCACTGTGTGGAGGGAAAGATGGCCTTTGCCCCCATGGTGATGAGGCTG
CATTGTGGGGCCACCCCCCAGTGGCCTGAGGGCTACTGGGAGGTGAATGGGTTCGGGCTGCTTGGCATCT
ACAAGTCTGACCTGGACAGGATTGGGGGCATGAACACCAAGGAGTTCCGAGACCGCTGGGGCGGGGAAGA
CTGGGAGCTGCTGGACAGGATACTCCAAGCGGGCCTGGACGTGGAGCGTCTCTCCCTCAGGAATTTCTTC
CATCATTTCCATTCCAAGCGAGGCATGTGGAGCCGTCGCCAGATGAAGACGCTGTAG

Translation (998 aa):
MGSPRAARPPLLLRPVKLLRRRFRLLLALAVVSVGLWTLYLELVASAQVGGNPLNRRYGSWRELAKALAS
RNIPAVDPHLQFYHPQRLSLEDHDIDQGVSSNSSYLKWNKPVPWLSEFRGRANLHVFEDWCGSSIQQLRR
NLHFPLYPHIRTTLRKLAVSPKWTNYGLRIFGYLHPFTDGKIQFAIAADDNAEFWLSLDDQVSGLQLLAS
VGKTGKEWTAPGEFGKFRSQISKPVSLSASHRYYFEVLHKQNEEGTDHVEVAWRRNDPGAKFTIIDSLSL
SLFTNETFLQMDEVGHIPQTAASHVDSSNALPRDEQPPADMLRPDPRDTLYRVPLIPKSHLRHVLPDCPY
KPSYLVDGLPLQRYQGLRFVHLSFVYPNDYTRLSHMETHNKCFYQENAYYQDRFSFQEYIKIDQPEKQGL
EQPGFEENLLEESQYGEVAEETPASNNQNARMLEGRQTPASTLEQDATDYRLRSLRKLLAQPREGLLAPF
SKRNSTASFPGRTSHIPVQQPEKRKQKPSPEPSQDSPHSDKWPPGHPVKNLPQMRGPRPRPAGDSPRKTQ
WLNQVESYIAEQRRGDRMRPQAPGRGWHGEEEVVAAAGQEGQVEGEEEGEEEEEEEDMSEVFEYVPVFDP
VVNWDQTFSARNLDFQALRTDWIDLSCNTSGNLLLPEQEALEVTRVFLKKLNQRSRGRYQLQRIVNVEKR
QDQLRGGRYLLELELLEQGQRVVRLSEYVSARGWQGIDPAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQ
EPKLCWPQGFSWSHRAVVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMDVEMALKR
SKLRSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGKMAFAPMVMRL
HCGATPQWPEGYWEVNGFGLLGIYKSDLDRIGGMNTKEFRDRWGGEDWELLDRILQAGLDVERLSLRNFF
HHFHSKRGMWSRRQMKTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH