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Report for CCDS13704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13704.1 Public Homo sapiens 21 TRAPPC10 24 110 108 CCDS HistoryNCBI Gene:7109Re-query CCDS DB by CCDS ID:13704.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13704.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291574.9 ENSP00000291574.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291574.9Link to Ensembl Protein Viewer:ENSP00000291574.4Re-query CCDS DB by Nucleotide ID:ENST00000291574Re-query CCDS DB by Protein ID:ENSP00000291574
Original member Current member NCBI NM_003274.5 NP_003265.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003274.5Link to Protein Sequence:NP_003265.3Re-query CCDS DB by Nucleotide ID:NM_003274Re-query CCDS DB by Protein ID:NP_003265Link to BLAST:NP_003265.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003265.3 1259 P48553-1 1259 100% 0 0

Chromosomal Locations for CCDS 13704.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 44012494 44012560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44032091 44032172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44037792 44037927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44052280 44052476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44055698 44055893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44059103 44059214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44063538 44063785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44074324 44074470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44075039 44075153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44076552 44076628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44077693 44077784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44079564 44079704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44080015 44080127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44082788 44083302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44084122 44084263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44086802 44086960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44087699 44087928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44089833 44089933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44091923 44092049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44094063 44094233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44098357 44098534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44102778 44102972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44103293 44103531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3780 nt):
ATGGACGCCTCTGAGGAGCCGCTGCCGCCGGTGATCTACACCATGGAGAACAAGCCCATCGTCACCTGTG
CTGGAGATCAGAATTTATTTACCTCTGTTTATCCAACGCTCTCTCAGCAGCTTCCAAGAGAACCAATGGA
ATGGAGAAGGTCCTATGGCCGGGCTCCGAAGATGATTCACCTAGAGTCTAACTTTGTTCAATTCAAAGAG
GAGCTGCTGCCCAAAGAAGGAAACAAAGCTCTGCTCACGTTTCCCTTCCTCCATATTTACTGGACAGAGT
GCTGTGATACCGAAGTGTATAAAGCTACAGTAAAAGATGACCTCACCAAGTGGCAGAATGTTCTGAAGGC
TCATAGCTCTGTGGACTGGTTAATAGTGATAGTTGAAAATGATGCCAAGAAAAAAAACAAAACCAACATC
CTTCCCCGAACCTCTATTGTGGACAAAATAAGAAATGATTTTTGTAATAAACAGAGTGACAGGTGTGTTG
TGCTCTCCGACCCCTTGAAGGACTCTTCTCGAACTCAGGAATCCTGGAATGCCTTCCTGACCAAACTCAG
GACATTGCTTCTTATGTCTTTTACCAAAAACCTAGGCAAGTTTGAGGATGACATGAGAACCTTGAGGGAG
AAGAGGACTGAGCCAGGCTGGAGCTTTTGTGAATATTTCATGGTTCAGGAGGAGCTTGCCTTTGTTTTCG
AGATGCTGCAGCAGTTCGAGGACGCCCTGGTGCAGTACGACGAACTGGACGCCCTCTTCTCTCAGTATGT
GGTCAACTTCGGGGCCGGGGATGGTGCCAACTGGCTGACTTTTTTCTGCCAGCCAGTGAAGAGCTGGAAC
GGATTGATCCTCCGAAAACCCATAGATATGGAGAAGCGGGAATCGATCCAGAGGCGAGAAGCCACCCTGT
TAGATCTGCGCAGTTACCTGTTCTCTCGCCAGTGCACCTTGCTGCTCTTCCTGCAGAGGCCGTGGGAGGT
GGCCCAGCGCGCCCTAGAGCTGCTGCACAACTGCGTGCAGGAACTGAAGCTCTTAGAAGTCTCTGTCCCA
CCTGGTGCTCTGGACTGCTGGGTGTTTCTGAGCTGTCTGGAGGTGTTGCAGAGGATAGAAGGCTGCTGTG
ACCGGGCACAGATCGACTCAAACATTGCCCACACTGTGGGGCTATGGAGCTATGCCACAGAAAAGTTAAA
GTCCTTGGGCTATCTATGTGGACTTGTGTCAGAGAAAGGACCTAACTCAGAAGATCTCAACAGGACAGTT
GACCTTTTGGCAGGTTTGGGAGCTGAGCGACCAGAAACAGCCAACACAGCTCAGAGTCCTTATAAGAAAC
TGAAAGAAGCATTATCGTCAGTGGAAGCTTTTGAAAAACACTACTTAGATTTGTCCCATGCCACCATTGA
AATGTATACAAGCATTGGGAGGATTCGATCTGCTAAGTTTGTTGGAAAAGATCTGGCAGAGTTTTACATG
AGGAAAAAGGCTCCACAAAAGGCAGAAATCTATCTTCAAGGAGCACTGAAAAACTACCTGGCTGAGGGCT
GGGCACTCCCCATCACACACACAAGGAAGCAGCTGGCCGAATGTCAAAAGCACCTTGGACAAATTGAAAA
CTACCTGCAGACCAGCAGCCTCTTAGCCAGTGACCACCACCTCACTGAAGAGGAGCGCAAGCACTTCTGC
CAGGAGATACTTGACTTTGCCAGCCAGCCGTCAGACAGCCCAGGTCATAAGATAGTGCTACCCATGCATT
CCTTTGCACAACTGCGAGATCTCCATTTTGATCCCTCCAATGCCGTGGTCCACGTGGGCGGCGTTTTGTG
CGTTGAGATAACCATGTACAGCCAGATGCCTGTGCCTGTTCACGTGGAGCAGATTGTGGTCAATGTCCAC
TTCAGCATTGAGAAAAACAGCTACCGGAAGACTGCGGAGTGGCTTACCAAGCACAAGACGTCCAATGGGA
TCATTAACTTTCCACCCGAGACCGCACCTTTCCCTGTATCCCAAAACAGTTTGCCCGCGCTGGAGTTGTA
TGAAATGTTTGAGAGAAGCCCATCTGATAACTCCTTGAACACGACTGGGATTATCTGCAGAAACGTCCAC
ATGCTCCTGAGAAGGCAGGAGAGCAGCTCCTCTCTAGAGATGCCCTCAGGGGTGGCTCTGGAGGAGGGTG
CCCACGTGCTGAGGTGCAGCCACGTGACCCTGGAACCAGGGGCCAACCAGATAACATTCAGGACTCAGGC
CAAGGAACCTGGAACGTATACACTCAGGCAGCTGTGCGCCTCGGTGGGCTCCGTGTGGTTCGTCCTCCCT
CACATCTACCCCATTGTGCAGTACGACGTGTACTCACAGGAGCCCCAGCTGCACGTGGAGCCGCTGGCTG
ATAGCCTTCTGGCAGGCATTCCTCAGAGAGTCAAGTTCACTGTCACTACCGGCCATTATACGATAAAGAA
TGGAGACAGCCTGCAGCTTAGCAATGCCGAAGCCATGCTCATCCTGTGCCAGGCGGAGAGCAGGGCTGTG
GTCTACTCCAACACGAGAGAACAGTCTTCTGAGGCCGCGCTCCGGATTCAGTCCTCCGACAAGGTCACGA
GCATCAGTCTGCCTGTTGCGCCTGCGTACCACGTGATCGAATTTGAACTGGAAGTTCTCTCTTTACCTTC
AGCCCCAGCACTCGGAGGGGAGAGTGACATGCTGGGGATGGCAGAGCCCCACAGGAAGCATAAGGACAAA
CAGAGAACTGGCCGCTGCATGGTTACCACAGACCACAAAGTGTCGATTGACTGCCCGTGGTCCATCTACT
CCACAGTCATCGCACTGACCTTCAGCGTACCCTTCAGGACCACACACAGCCTCCTGTCCTCAGGAACACG
GAAATATGTTCAAGTTTGTGTCCAGAATTTGTCAGAACTTGACTTTCAGCTGTCAGATAGTTATCTTGTA
GATACCGGTGATAGTACCGACCTGCAACTAGTACCACTGAACACGCAGTCCCAGCAGCCCATCTACAGCA
AGCAGTCGGTGTTCTTCGTCTGGGAACTCAAGTGGACAGAAGAGCCTCCCCCTTCTCTGCATTGCCGGTT
CTCTGTTGGATTTTCCCCAGCTTCTGAGGAACAGCTGTCTATCTCCTTAAAGCCGTATACTTATGAATTT
AAAGTGGAAAATTTTTTTACATTATACAACGTGAAGGCTGAGATCTTTCCCCCTTCGGGAATGGAGTATT
GCAGAACAGGCTCCCTCTGCTCCCTGGAGGTTTTGATCACGAGGCTCTCAGACCTCTTGGAGGTGGATAA
AGATGAAGCACTGACTGAATCTGATGAGCATTTTTCGACAAAGCTTATGTATGAAGTTGTCGACAACAGT
AGCAACTGGGCAGTGTGTGGGAAAAGCTGCGGTGTCATCTCCATGCCAGTGGCTGCTCGGGCCACTCACA
GGGTCCACATGGAAGTGATGCCGCTCTTCGCCGGGTATCTCCCCCTGCCCGACGTCAGGCTGTTCAAGTA
CCTCCCCCATCATTCTGCACACTCCTCCCAACTGGACGCTGACAGCTGGATAGAAAACGACAGCCTGTCA
GTAGACAAGCACGGGGACGACCAGCCGGACAGCAGCAGCCTCAAGAGCAGGGGCAGCGTGCATTCGGCCT
GCAGCAGCGAGCACAAAGGCCTACCCATGCCCCGGCTGCAGGCACTGCCGGCCGGCCAGGTCTTCAACTC
CAGCTCGGGCACACAAGTCCTGGTCATCCCCAGCCAAGATGACCACGTCCTGGAAGTCAGTGTAACATGA

Translation (1259 aa):
MDASEEPLPPVIYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKE
ELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVIVENDAKKKNKTNI
LPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLRE
KRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWN
GLILRKPIDMEKRESIQRREATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVP
PGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTV
DLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKFVGKDLAEFYM
RKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQTSSLLASDHHLTEEERKHFC
QEILDFASQPSDSPGHKIVLPMHSFAQLRDLHFDPSNAVVHVGGVLCVEITMYSQMPVPVHVEQIVVNVH
FSIEKNSYRKTAEWLTKHKTSNGIINFPPETAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVH
MLLRRQESSSSLEMPSGVALEEGAHVLRCSHVTLEPGANQITFRTQAKEPGTYTLRQLCASVGSVWFVLP
HIYPIVQYDVYSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAV
VYSNTREQSSEAALRIQSSDKVTSISLPVAPAYHVIEFELEVLSLPSAPALGGESDMLGMAEPHRKHKDK
QRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYVQVCVQNLSELDFQLSDSYLV
DTGDSTDLQLVPLNTQSQQPIYSKQSVFFVWELKWTEEPPPSLHCRFSVGFSPASEEQLSISLKPYTYEF
KVENFFTLYNVKAEIFPPSGMEYCRTGSLCSLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNS
SNWAVCGKSCGVISMPVAARATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHSSQLDADSWIENDSLS
VDKHGDDQPDSSSLKSRGSVHSACSSEHKGLPMPRLQALPAGQVFNSSSGTQVLVIPSQDDHVLEVSVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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