NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25955.1 Public Mus musculus 12 Cdkl1 23 108 98 CCDS HistoryNCBI Gene:71091Re-query CCDS DB by CCDS ID:25955.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021377.4 ENSMUSP00000021377.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021377.4Link to Ensembl Protein Viewer:ENSMUSP00000021377.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021377Re-query CCDS DB by Protein ID:ENSMUSP00000021377
Original member Current member NCBI NM_183294.2 NP_899117.1 Accepted alive Link to Nucleotide Sequence:NM_183294.2Link to Protein Sequence:NP_899117.1Re-query CCDS DB by Nucleotide ID:NM_183294Re-query CCDS DB by Protein ID:NP_899117Link to BLAST:NP_899117.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899117.1 352 Q8CEQ0 352 100% 0 0

Chromosomal Locations for CCDS 25955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69747303 69747410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69748804 69748959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69750718 69750774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69754125 69754207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69756446 69756646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69757208 69757298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69760098 69760170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69769400 69769521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69789987 69790154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGAAAAATATGAAAAAATTGGAAAGATTGGAGAAGGCTCCTATGGGGTAGTGTTCAAGTGCAGAAACA
GGGACACGGGTCAGATCGTGGCCATCAAGAGGTTTCTGGAAACCGAAGATGACCCTGTCATAAAGAAAAT
CGCCCTTCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCTGGAAGTCTTC
CGGAGGAAGCGGAGGCTTCACCTGGTGTTCGAGTACTGCGACCACACGGTGCTTCACGAGCTGGATCGGT
ATCAGAGGGGGGTACCAGAGCCTCTCGTGAAGAACATAACTTGGCAGACACTGCAGGCTGTAAATTTCTG
CCATAAACATAACTGCATACACAGAGACGTGAAGCCGGAAAATATTCTCATCACCAAACAGTCAGCCATT
AAGCTCTGTGACTTTGGGTTCGCACGGCTTCTCACTGGACCAGGTGACTACTACACGGACTACGTGGCCA
CCCGGTGGTACCGCTCACCCGAGCTGCTAGTGGGAGACACGCAGTATGGTCCCCCTGTAGATGTCTGGGC
AATTGGCTGTGTGTTTGCTGAGTTACTGTCCGGAGTGCCTCTATGGCCAGGAAAATCTGACGTGGATCAG
CTCTACCTGATAAGGAAAACCCTGGGGGACCTCATTCCCAGGCACCAGCAAGTATTTAGCATGAATCAAT
ACTTCAGTGGGGTGAAAATTCCAGACCCTGAAGACATGGAAACACTTGAGTTGAAATTTCCAAACATCTC
CTACTCTGCACTGGGCTTCTTAAAGGGCTGCCTCCACATGGATCCTGCTGAGAGGCTGACATGCGAACAG
CTGTTGCAGCATCCATATTTTGACAGCATTCGAGAAGTTGGGGAGTTGACGAGACAACATGACAAACCAG
CGAGGAAGACTCTGAGGCAGAGTAGAAAGCACTTGACTGGGCTGCAGTACCTACCTCAGCTAACCAGCAG
CCGCATCCTTCCAGCTTTGGACAATAAGAAGTACCACTGTAGTACCAAGAGATTTAACTACCATTTTCCA
AATATTTAA

Translation (352 aa):
MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQLKHPNLVNLLEVF
RRKRRLHLVFEYCDHTVLHELDRYQRGVPEPLVKNITWQTLQAVNFCHKHNCIHRDVKPENILITKQSAI
KLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQ
LYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLELKFPNISYSALGFLKGCLHMDPAERLTCEQ
LLQHPYFDSIREVGELTRQHDKPARKTLRQSRKHLTGLQYLPQLTSSRILPALDNKKYHCSTKRFNYHFP
NI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH