NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6726.1 Public Homo sapiens 9 TMOD1 24 110 108 CCDS HistoryNCBI Gene:7111Re-query CCDS DB by CCDS ID:6726.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6726.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259365.9 ENSP00000259365.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259365.9Link to Ensembl Protein Viewer:ENSP00000259365.3Re-query CCDS DB by Nucleotide ID:ENST00000259365Re-query CCDS DB by Protein ID:ENSP00000259365
Original member Current member EBI ENST00000395211.6 ENSP00000378637.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395211.6Link to Ensembl Protein Viewer:ENSP00000378637.2Re-query CCDS DB by Nucleotide ID:ENST00000395211Re-query CCDS DB by Protein ID:ENSP00000378637
Original member Current member NCBI NM_001166116.2 NP_001159588.1 Accepted alive Link to Nucleotide Sequence:NM_001166116.2Link to Protein Sequence:NP_001159588.1Re-query CCDS DB by Nucleotide ID:NM_001166116Re-query CCDS DB by Protein ID:NP_001159588Link to BLAST:NP_001159588.1
Original member Current member NCBI NM_003275.4 NP_003266.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003275.4Link to Protein Sequence:NP_003266.1Re-query CCDS DB by Nucleotide ID:NM_003275Re-query CCDS DB by Protein ID:NP_003266Link to BLAST:NP_003266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159588.1 359 P28289-1 359 100% 0 0
NP_003266.1 359 P28289-1 359 100% 0 0

Chromosomal Locations for CCDS 6726.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97524189 97524308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97546185 97546341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97553281 97553400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97562732 97562821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97564038 97564168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97565848 97565955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97568894 97569037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97591291 97591435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97599634 97599698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGTCGTACAGACGAGAACTAGAGAAATACCGTGACCTGGATGAAGATGAAATCCTTGGAGCCCTAACAG
AGGAAGAGCTGAGGACCCTGGAAAATGAGCTGGATGAGCTGGACCCTGATAATGCACTGCTGCCTGCAGG
CCTGAGGCAGAAGGATCAGACCACCAAGGCGCCCACGGGCCCCTTTAAAAGAGAGGAGCTCTTGGATCAC
TTGGAAAAGCAAGCAAAGGAGTTTAAGGACCGAGAAGATCTGGTCCCCTACACAGGGGAAAAACGAGGAA
AGGTCTGGGTTCCTAAGCAGAAGCCACTGGATCCTGTGCTGGAAAGTGTGACGCTGGAACCGGAGCTGGA
GGAAGCCTTGGCAAATGCTTCAGATGCAGAACTCTGTGACATTGCAGCGATCCTGGGCATGCACACGCTC
ATGAGTAACCAGCAGTACTACCAGGCCCTGAGCAGCAGCTCCATCATGAACAAGGAGGGGCTCAACAGCG
TGATTAAACCCACACAATACAAGCCTGTGCCCGACGAAGAACCAAATTCAACAGACGTAGAGGAAACGCT
GGAACGGATAAAGAACAACGACCCAAAACTTGAAGAAGTTAACCTCAATAATATCCGGAATATCCCCATC
CCCACCCTCAAGGCATATGCAGAAGCCCTGAAAGAAAACTCATATGTGAAGAAGTTCAGCATCGTGGGGA
CACGGAGTAATGACCCCGTGGCGTATGCCCTTGCTGAGATGCTCAAGGAGAACAAGGTGTTGAAGACACT
GAATGTGGAATCCAACTTCATTTCTGGAGCTGGGATTCTGCGCCTGGTAGAAGCCCTCCCATACAACACT
TCTCTGGTGGAAATGAAAATTGACAACCAGAGCCAGCCCCTGGGCAACAAAGTGGAAATGGAGATTGTGA
GCATGTTGGAAAAAAACGCAACACTTCTCAAATTCGGCTACCACTTTACCCAGCAAGGACCCCGGCTTCG
GGCATCCAACGCAATGATGAACAACAATGACCTTGTGAGGAAGAGGAGGCTTGCGGACCTGACTGGGCCC
ATCATTCCCAAGTGCCGGAGTGGTGTCTAG

Translation (359 aa):
MSYRRELEKYRDLDEDEILGALTEEELRTLENELDELDPDNALLPAGLRQKDQTTKAPTGPFKREELLDH
LEKQAKEFKDREDLVPYTGEKRGKVWVPKQKPLDPVLESVTLEPELEEALANASDAELCDIAAILGMHTL
MSNQQYYQALSSSSIMNKEGLNSVIKPTQYKPVPDEEPNSTDVEETLERIKNNDPKLEEVNLNNIRNIPI
PTLKAYAEALKENSYVKKFSIVGTRSNDPVAYALAEMLKENKVLKTLNVESNFISGAGILRLVEALPYNT
SLVEMKIDNQSQPLGNKVEMEIVSMLEKNATLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRLADLTGP
IIPKCRSGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH