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Report for CCDS40107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40107.1 Public Mus musculus 7 Eri2 23 108 98 CCDS HistoryNCBI Gene:71151Re-query CCDS DB by CCDS ID:40107.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150844.2 ENSMUSP00000120547.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150844.2Link to Ensembl Protein Viewer:ENSMUSP00000120547.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150844Re-query CCDS DB by Protein ID:ENSMUSP00000120547
Original member Current member NCBI NM_027698.5 NP_081974.3 Accepted alive Link to Nucleotide Sequence:NM_027698.5Link to Protein Sequence:NP_081974.3Re-query CCDS DB by Nucleotide ID:NM_027698Re-query CCDS DB by Protein ID:NP_081974Link to BLAST:NP_081974.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081974.3 688 Q5BKS4 688 100% 0 0

Chromosomal Locations for CCDS 40107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 119785210 119786544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119786739 119786827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119787404 119787485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119787734 119787834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119790234 119790390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119791101 119791228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119792265 119792348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119792431 119792498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119793918 119793940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGGCGACCAAGAGACTGGCGCGGCGGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAA
ATCCAGGAGGGAGCAGATTGAAACAGTTGTATGCCTACTTAATTGTCGTTGACTTTGAGTCTACCTGCTG
GAATGATGGGAAGCACCACAGTAGCCCTGAAATAATTGAATTTCCAGCAGTTTTGTTGAATACAGCAACT
GGAGAGATTGAATCTGAGTTTCATGCTTACGTTCAGCCTCAAGAACATCCAATTCTTTCTGAATTTTGCA
CAGAACTGACAGGGATAAAACAGGTTCAAGTCGATGAAGGAGTCCCCCTGAAGATTTGCTTGTCCCAGTT
CTGTAAATGGATCCATAAGCTGCAGCAGCAGCAGACGATCAGCTTTGCTGCTGGGGATTCAGAGCCTTCT
ACTTCTGAAGTGAAACTGTGTGCTTTTGTTACATGGTCAGACTGGGACTTGGGCGTTTGCCTAGAGTATG
AGTGTAGAAGAAAGCAGCTGTTAAAACCTGTGTTCTTAAACTCTTGGATTGATCTCAGAGCAACTTACAG
GCTTTTTTATAAAAGAAAACCCAAAGGACTGAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGA
CGAGAACATTCTGGCTTAGATGATTCTCGGAACACTGCTCTTCTTGCTTGGAAAATGATCAGGGATGGTT
GCTTAATGAAAATTACCAGGTCCTTGAACAAGGTTCTCACTAAGAAGAATCCCAAGATTTTGGCCAGAAA
TTTGGGTACAGATCAAGTTGAAGAAGCAGCTACTTGCAACATGAGTATCCAGGGCCCCAGCATATATCAA
AAGGAGCTCCAAAGTACAGTAAATGCAGAGGAAAATGCCCAGATGAATTCAGTCTGTGTGAATTCCTCCT
GTATAAAGGGCCAATTGCAACCAAAAAGCAACATGAAAGCAGATCTTTACAATATCAGACATAGCTTTCC
TCTTTTCACTACCAAGTCGTCGACATCTGTGGACCAACTGCATTCTCCCACCTTGAATCCACCTCTCACT
ATGCAAAAGCCAAGTAAAAGTGATCAGCTTGCACTGAATGACAGCTCAAAGTCCTCAACACTTAACTCCA
ACTTAGTGCTTGTATCTACAACCATTCCGTCAGTTAATCATGTTTCTGATGTAGAAATGGGTCATACTTT
TGACTGTTTACCGATGTTGGCTGAGTGGGAAGATGTAGTTTTACTGCCAGCATCTCAGGCTGAGCCAGAC
ACAGACTGTATGCCTCCTGTTAGTGACACAAATGTCAGTACTTCACTTAATTCTGCAGAGAGATCACTTG
TTCCAGAAGAACCAGAAACCCTTAGTTATGAAAACTTTGAAGACCTTCAGGAAACTCCTCAAAACTCTGA
GACATCTAAGTCTATTGTGTATAAGAGTCCTCACAGTACAGTCTATGATGTAAAAGGAGCCAAACACCCA
GGTTCGGATGCCTCTGCTTTTAAGTTACCCAAATGCAAACCATTTCCTTTCACCAGTGTTCATGCCAGTG
CAGCATATCCTTCAGTTCTGAGGAAAGATCCTCTCCTTTCAGGTGGCACTAAAAGGAATTCACTTAGTCC
TCCAGCTTCCCCGAGAACCAAAAGGCAGACCTTCACTATTCATGAAGAAAAGCCTACATCATCTATTTGC
TCCCCAGGAACAACTTCTTGTAGAGTTTCTCCCTCTGTACTAACATCTACAGTTAATCTACAGGAGCCTT
GGAAGACTGGAAAGATGACACCGCCTCTATGCAAGTGTGGCAGAAGATCTAAGCGGCTTATTGTTTCTAA
TAATGGGCCAAACCACGGGAAAGCCTTCTATTGTTGCCCAGTTGGGAAATACCAACAAGACAGAAAATGC
TGTGGTTATTTTAAATGGGAACAAACACTTCAAAAAGAAAGGACCAATGGCAAAGCTCTGTCTCATTCCT
CAGAAGGGCTCACTTTCAGCTCTCCAGAAACAAGCCGTATTCATGACAGAAATTTAAGTTTTCCTATTAA
GAATTCTTTACGACTCAGACCTTCAATGAGACATTGA

Translation (688 aa):
MATKRLARRLGLIRRKSVTPASGNPGGSRLKQLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTAT
GEIESEFHAYVQPQEHPILSEFCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPS
TSEVKLCAFVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSG
REHSGLDDSRNTALLAWKMIRDGCLMKITRSLNKVLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQ
KELQSTVNAEENAQMNSVCVNSSCIKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLT
MQKPSKSDQLALNDSSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPD
TDCMPPVSDTNVSTSLNSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVYDVKGAKHP
GSDASAFKLPKCKPFPFTSVHASAAYPSVLRKDPLLSGGTKRNSLSPPASPRTKRQTFTIHEEKPTSSIC
SPGTTSCRVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDRKC
CGYFKWEQTLQKERTNGKALSHSSEGLTFSSPETSRIHDRNLSFPIKNSLRLRPSMRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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