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Report for CCDS15339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15339.1 Public Mus musculus 1 Cfhr2 23 108 98 CCDS HistoryNCBI Gene:545366Re-query CCDS DB by CCDS ID:15339.1Re-query CCDS DB by GeneID:545366See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094489.4 ENSMUSP00000092065.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094489.4Link to Ensembl Protein Viewer:ENSMUSP00000092065.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094489Re-query CCDS DB by Protein ID:ENSMUSP00000092065
Original member Current member NCBI NM_001025575.2 NP_001020746.1 Accepted alive Link to Nucleotide Sequence:NM_001025575.2Link to Protein Sequence:NP_001020746.1Re-query CCDS DB by Nucleotide ID:NM_001025575Re-query CCDS DB by Protein ID:NP_001020746Link to BLAST:NP_001020746.1

Chromosomal Locations for CCDS 15339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 139810823 139811019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139813434 139813616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139821624 139821800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139822172 139822366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139831064 139831237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139858555 139858627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGGGTTCTGCAGCATGTTGCTCTTATCCAATATCCTCCTAACTGCATGGCTTTCTACTGCTAAAGGGG
AAGAAAAGACATGCTCACCTCCTTATATTCTAAATGGTATCTACACACCTCACAGGATTATACACAAAAG
TGATGATGAAATCAGATATGAATGTAATTATGGCTTCTATCCTGTAACTGGATCAACTGTTTCAAAGTGT
ACACCCACTGGCTGGATCCCTGTTCCAAGATGTACCTTGAAACCATGTGAATTTCCACAATTCAAATATG
GACGTCTGTATTATGAAGAGAGCCTGAGACCCAACTTCCCAGTGTCTATAGGAAATAAGTACAGCTATAA
GTGTGACAACGGGTTTTCACCACCTTCTGGGTATTCCTGGGACTACCTTCGTTGCACAGCACAAGGGTGG
GAGCCTGAAGTCCCATGCGTCAGGAAATGTGTTTTCCATTATGTGGAGAATGGAGACTCTACATACTGGG
AAAAAATATATGTGCAGGGTCAGTCTTTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCAAAATGGTCA
AGACACAATGACATGTACAGAGAATGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCAACTCAACAAGG
ACATGTGGGCCTCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCATTACCAGAATATGAACCAT
TATCATCAGTTGACTATCAGTGCCAGAAGTATTATCTCCTTAAGGGAAATAAGACAATAACATGTAGAAA
TGGAAATTGGTCTGAGCCACCAATGTGCTTACATGCATGTGTAATACCAGAAAACATTATGGAAGCACAC
AATATAATTCTCAAATGGAGACACACTGAAAAGATTTATGCCCATTCAGGGGAGGATATTGAATTTGAAT
GTAAACGTGGATATCAGAAAGCAAGAGGATCACTGCCATTTCGTACAAAGTGCATTAATGGCACCATCAA
TTATCCCACTTGTGTATAA

Translation (332 aa):
MGFCSMLLLSNILLTAWLSTAKGEEKTCSPPYILNGIYTPHRIIHKSDDEIRYECNYGFYPVTGSTVSKC
TPTGWIPVPRCTLKPCEFPQFKYGRLYYEESLRPNFPVSIGNKYSYKCDNGFSPPSGYSWDYLRCTAQGW
EPEVPCVRKCVFHYVENGDSTYWEKIYVQGQSLKVQCYNGYSLQNGQDTMTCTENGWSPPPKCIRINSTR
TCGPPPPIDNGDITSLSLPEYEPLSSVDYQCQKYYLLKGNKTITCRNGNWSEPPMCLHACVIPENIMEAH
NIILKWRHTEKIYAHSGEDIEFECKRGYQKARGSLPFRTKCINGTINYPTCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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