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Report for CCDS35929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35929.1 Public Mus musculus 10 Arid5b 23 108 98 CCDS HistoryNCBI Gene:71371Re-query CCDS DB by CCDS ID:35929.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35929.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219238.1 ENSMUSP00000151227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219238.1Link to Ensembl Protein Viewer:ENSMUSP00000151227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219238Re-query CCDS DB by Protein ID:ENSMUSP00000151227
Original member Current member NCBI NM_023598.2 NP_076087.2 Accepted alive Link to Nucleotide Sequence:NM_023598.2Link to Protein Sequence:NP_076087.2Re-query CCDS DB by Nucleotide ID:NM_023598Re-query CCDS DB by Protein ID:NP_076087Link to BLAST:NP_076087.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076087.2 1188 Q8BM75-1 1188 100% 0 0

Chromosomal Locations for CCDS 35929.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 68096504 68098669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68101895 68102093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68118251 68118348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68126699 68126751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68128789 68128993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68134994 68135106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68186026 68186256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68243004 68243229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68277930 68278184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68278690 68278710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3567 nt):
ATGGAGCCCAACTCACTCCAGTGGGTCGGCTCACCGTGTGGCTTGCACGGACCTTATATTTTTTATAAGG
CTTTTCAATTCCACCTTGAAGGCAAACCAAGAATCTTGTCCCTTGGCGACTTTTTCTTTGTAAGATGTAC
GCCAAAGGATCCGATTTGCATAGCGGAGCTCCAGCTGTTGTGGGAAGAAAGGACCAGCCGGCAACTTTTA
TCCAGCTCGAAACTTTATTTCCTCCCCGAAGACACTCCCCAGGGCAGAAATAGCGACCATGGCGAGGATG
AGGTCATCGCTGTCTCTGAAAAGGTGATTGTTAAATTAGAGGACCTTGTCAAATGGGCGCATTCTGATTT
CTCCAAGTGGAGGTGTGGGCTCCGAGCCACTCCAGTGAAAACTGAGGCCTTCGGGAGAAACGGACAGAAG
GAGGCTCTGCTCAGGTACAGGCAGTCAACCCTCAACAGTGGGCTCAACTTCAAAGACGTTCTCAAGGAAA
AAGCTGATCTCGGGGAAGATGAGGAAGAAACCAACGTGATTGTGCTCAGTTACCCCCAGTACTGTCGGTA
CCGGTCCATGCTTAAACGGATCCAGGATAAGCCATCGTCCATCCTCACGGACCAGTTCGCATTAGCCCTG
GGGGGCATCGCAGTGGTCAGCAGAAACCCCCAGATCCTGTACTGCCGGGATACCTTTGATCACCCCACTC
TGATAGAAAACGAGAGTGTGTGTGATGAGTTCGCGCCAAATCTTAAAGGCAGACCACGCAAAAAGAAAAC
ATGTCCCCAGAGAAGAGATTCCTTCAGTGGCTCAAAGGACCCCAACAATAACTGTGACGGTAAAGTTATC
AGCAAGGTGAAAGGAGAGGCCAGGTCAGCCTTGACCAAGCCGAAGAATAACCACAATAACTGTAAAAAAA
CCTCAAATGAAGAAAAGCCAAAGCTGTCTATTGGCGAAGAATGCAGGGCAGATGAACAAGCCTTCTTAGT
GGCCCTGTATAAATACATGAAAGAAAGAAAAACGCCCATCGAGCGAATTCCCTACTTGGGTTTCAAACAG
ATTAACCTTTGGACTATGTTTCAAGCTGCTCAAAAACTGGGAGGATATGAAACAATAACAGCCCGCCGTC
AGTGGAAACATATTTATGACGAGTTAGGTGGTAATCCTGGGAGCACCAGTGCGGCCACCTGTACTCGCAG
ACACTACGAAAGGTTAATCCTGCCATACGAAAGATTTATTAAGGGAGAAGAAGATAAGCCTCTGCCGCCA
ATCAAACCTCGGAAACAGGAAAACAATACACAGGAAAATGAGAATAAAACAAAAGTCTCGGGAAACAAAC
GTATCAAACAGGAAATGGCCAAAAACAAGAAAGAAAAAGAGAACACCCCCAAACCCCAAGATACATCTGA
GGTTTCATCAGAGCAAAGGAAGGAAGAAGAGACGTTAAACCACAAAAGCGCCCCCGAGCCTCTCCCTGCT
CCTGAAGTAAAGGGGAAACCAGAAGGGCACAAGGATCTTGGAGCGAGGGCCCCAGTGTCCAGAGCAGACC
CAGAAAAGGCCAATGAAACTGACCAAGGTTCCAACAGCGAGAAAGAGGCCGAGGAGATGGGAGATAAGGG
CCTTGCCCCTCTGCTTCCAAGCCCTCCCTTGCCTCCTGAAAAAGATTCAGCTCCCACCCCTGGGGCTGGC
AAACAGCCCCTTGCCTCTCCCAGCACCCAGATGGACTCAAAGCAAGAAGCCAAACCCTGCTGCTTTACAG
AGAGCCCTGAGAAGGACCTCCAAGGAGCACCCTTCTCCAGCTTCTCTGCCACCAAGCCACCACTGACAAG
CCAGAACGAGGCAGAGGAAGAGCAGCTTCCTGCCACGGCCAACTACATTGCCAACTGCACTGTGAAGGTG
GACCAGCTGGGCAGTGACGACATCCACACTGCTCTCAAGCAGACCCCGAAGGTCCTTGTGGTCCAATCAT
TTGACATGTTCAAAGACAAAGACTTGACCGGCCCCATGAATGAGAACCACGGACTTAACTACACGCCCCT
GCTTTACTCCCGGGGCAACCCTGGTATCATGTCCCCATTGGCTAAGAAAAAGCTTTTGTCTCAGGTGAGT
GGGGCCAGCCTCTCCAGCAGCTATCCCTATGGCTCCCCGCCCCCTTTGATCAGCAAAAAGAAACTCATTG
CCAGGGAAGACCTGTGCTCGGGTTTGTCCCAGGGCCACCACAGCCAAAGCTCTGACCACACGGCCGTCAG
CCGGCCATCCGTAATCCAACATGTTCAGAGCTTCAAAAACAAGGCCTCCGAAGACAGAAAGAGCATCAAC
GACATCTTCAAGCACGACAAACTGAGCCGGTCCGATGCTCATCGATGTGGCTTCTCCAAGCACCAGCTCG
GCTCCCTGGCAGACTCCTACATCCTCAAACAAGAGACACAGGAGGGCAAAGATAAACTGTTAGAGAAGAG
AGCCGTCTCCCACGCCCATGTGCCCAGTTTCCTGGCCGACTTCTACTCATCCCCGCATCTCCATAGCCTC
TACCGGCACACAGAGCACCATCTTCACAACGAACAGTCCTCCAAGTATGCCGCTAGGGACGCGTACCAGG
AATCCGAAAACGGCGCCTTTCTTTCTCACAAGCACCCGGAGAAGATCCACGTCAATTATCTCGCATCTCT
CCACCTGCAAGATAAGAAGGTGGCAGCGGCAGAAGCCTCTACCGATGATCAACCCACAGATCTGAGCCTT
CCCAAGAACCCACATAAACTAACCAGCAAAGTCCTGGGCCTGGCCCACTCCACCTCGGGGTCCCAGGAGA
TCAAAGGCGCCTCCCAGTTCCAGGTCGTCAGCAACCAGAGTCGAGACTGTCATCCCAAAGCCTGCCGGGT
ATCGCCCATGACCATGTCGGGCCCTAAGAAATACCCTGAGTCACTTGCAAGGTCAGGAAAGCCTCACCAG
GTGAGACTGGAGAACTTCAGGAAAATGGAAGGCATGGTCCATCCCATCCTGCACCGGAAGATGAGCCCGC
AGAACATTGGAGCTGCGCGCCCCATAAAGCGCAGCCTGGAGGATTTAGATCTGGTGATCGCCGGGAAAAA
GGCCAGGGCTGTGTCTCCCTTGGACCCAGCCAAGGAGGCTTCTGGGAAAGAAAAGGCCTCCGAACAGGAG
AGCGAGGGCAACAAAGGCGCCTACGGTGGGCATTCTGGGGCTGCCTCAGAAGGGCACAAGCTCCCTCTCT
CCACCCCTATCTTCCCGGGTTTGTATTCTGGGAGCCTGTGTAATTCAGGCCTCAACTCCAGGCTCCCGGC
CGGGTACTCCCATTCTCTGCAGTACTTGAAGAACCAGACGGTGCTTTCTCCTCTCATGCAACCCCTGGCT
TTCCACTCGCTCGTGATGCAGAGAGGAATTTTTACATCGCCGACAAATTCTCAGCAGCTGTACAGACACT
TGGCCGCAGCCACCCCTGTAGGAAGTTCCTACGGGGACCTGTTGCACAACAGCATCTACCCATTAGCTGG
TATCAACCCTCAGGCTGCCTTCCCATCTTCTCAGCTGTCATCCGTACACCCCAGCACAAAACTGTAA

Translation (1188 aa):
MEPNSLQWVGSPCGLHGPYIFYKAFQFHLEGKPRILSLGDFFFVRCTPKDPICIAELQLLWEERTSRQLL
SSSKLYFLPEDTPQGRNSDHGEDEVIAVSEKVIVKLEDLVKWAHSDFSKWRCGLRATPVKTEAFGRNGQK
EALLRYRQSTLNSGLNFKDVLKEKADLGEDEEETNVIVLSYPQYCRYRSMLKRIQDKPSSILTDQFALAL
GGIAVVSRNPQILYCRDTFDHPTLIENESVCDEFAPNLKGRPRKKKTCPQRRDSFSGSKDPNNNCDGKVI
SKVKGEARSALTKPKNNHNNCKKTSNEEKPKLSIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQ
INLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPP
IKPRKQENNTQENENKTKVSGNKRIKQEMAKNKKEKENTPKPQDTSEVSSEQRKEEETLNHKSAPEPLPA
PEVKGKPEGHKDLGARAPVSRADPEKANETDQGSNSEKEAEEMGDKGLAPLLPSPPLPPEKDSAPTPGAG
KQPLASPSTQMDSKQEAKPCCFTESPEKDLQGAPFSSFSATKPPLTSQNEAEEEQLPATANYIANCTVKV
DQLGSDDIHTALKQTPKVLVVQSFDMFKDKDLTGPMNENHGLNYTPLLYSRGNPGIMSPLAKKKLLSQVS
GASLSSSYPYGSPPPLISKKKLIAREDLCSGLSQGHHSQSSDHTAVSRPSVIQHVQSFKNKASEDRKSIN
DIFKHDKLSRSDAHRCGFSKHQLGSLADSYILKQETQEGKDKLLEKRAVSHAHVPSFLADFYSSPHLHSL
YRHTEHHLHNEQSSKYAARDAYQESENGAFLSHKHPEKIHVNYLASLHLQDKKVAAAEASTDDQPTDLSL
PKNPHKLTSKVLGLAHSTSGSQEIKGASQFQVVSNQSRDCHPKACRVSPMTMSGPKKYPESLARSGKPHQ
VRLENFRKMEGMVHPILHRKMSPQNIGAARPIKRSLEDLDLVIAGKKARAVSPLDPAKEASGKEKASEQE
SEGNKGAYGGHSGAASEGHKLPLSTPIFPGLYSGSLCNSGLNSRLPAGYSHSLQYLKNQTVLSPLMQPLA
FHSLVMQRGIFTSPTNSQQLYRHLAAATPVGSSYGDLLHNSIYPLAGINPQAAFPSSQLSSVHPSTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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