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Report for CCDS37818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37818.1 Public Mus musculus 18 Prr16 23 108 98 CCDS HistoryNCBI Gene:71373Re-query CCDS DB by CCDS ID:37818.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116639.3 ENSMUSP00000112338.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116639.3Link to Ensembl Protein Viewer:ENSMUSP00000112338.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116639Re-query CCDS DB by Protein ID:ENSMUSP00000112338
Original member Current member EBI ENSMUST00000235541.1 ENSMUSP00000158421.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235541.1Link to Ensembl Protein Viewer:ENSMUSP00000158421.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235541Re-query CCDS DB by Protein ID:ENSMUSP00000158421
Original member Current member NCBI NM_001081224.2 NP_001074693.1 Accepted alive Link to Nucleotide Sequence:NM_001081224.2Link to Protein Sequence:NP_001074693.1Re-query CCDS DB by Nucleotide ID:NM_001081224Re-query CCDS DB by Protein ID:NP_001074693Link to BLAST:NP_001074693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074693.1 304 A3KMN5-1 304 100% 0 0

Chromosomal Locations for CCDS 37818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 51117931 51118089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 51302610 51303365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGTCAGCCAAGTCCAAGGGGAACCCCTCCTCGTCCTCCGCAGCCGAGGGACCGCCGGCAGCCTCCAAAA
CCAAGGTGAAGGAGCAGATCAAGATCATAGTGGAGGATCTGGAATTAGTCCTGGGCGACCTGAAGGACGT
GGCCAAAGAACTTAAGGAGGTGGTTGACCAGATTGACACCCTGACCTCTGATCTACAGCTGGAAGATGAG
ATGACCGACAGCTCCAAAACAGACACTCTGAACAGCAGCTCCAGTGGGACAACAGCCTCCAGCATAGAGA
AGATCAAAGAACAGGCCAATGCTCCCCTCATTAAACCTCCAGCACACCCGTCTGCTATCCTGACTGTCCT
GAGAAAGCCAAACCCTCCACCGCCTCCTCCAAGGTTGACACCCGTGAGGTGTGAAGAGCCTCAGAGAGTG
GTGCCGACTGCCAACCCTGTAAAGACCAATGGCACCCTTCTGCGGAATGGAGGCTTAGCGGGGAGGCCCA
ACAAAATTCCAAATGGAGACATCTGCTGCATACCCAACAGTAACTTGGACAAGGCTCCGTTGCAGTCTCT
GATGCACAGACCTGAAAAGGACAGGAGTCCTCAGGCAGGGCCTCGGGAACGAGTTCGGTTTAATGAAAAA
GTACAATACCATGGCTATTGTCCTGACTGTGAGAGCCGGTATAACATAAAGAATAGGGAGGTCCATTTAC
ACAGTGAACCAGTCCATCCACCTGGAAAGATCCCACACCAAGGACCTCTGCTCCATCCTCCACCTCATCT
CCCCAATTTCCCATTAGAAAATGGGGGACTGGGAATAAGCCACAGTAACAGTTTCCCCCCTCCCACACCT
GCAACCGTGCCTCCTCCCGCTGCACCAAAACCACAGAAGACCATCCTGAGGAAATCCACCACTACCACAG
TGTGA

Translation (304 aa):
MSAKSKGNPSSSSAAEGPPAASKTKVKEQIKIIVEDLELVLGDLKDVAKELKEVVDQIDTLTSDLQLEDE
MTDSSKTDTLNSSSSGTTASSIEKIKEQANAPLIKPPAHPSAILTVLRKPNPPPPPPRLTPVRCEEPQRV
VPTANPVKTNGTLLRNGGLAGRPNKIPNGDICCIPNSNLDKAPLQSLMHRPEKDRSPQAGPRERVRFNEK
VQYHGYCPDCESRYNIKNREVHLHSEPVHPPGKIPHQGPLLHPPPHLPNFPLENGGLGISHSNSFPPPTP
ATVPPPAAPKPQKTILRKSTTTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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