NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52603.1 Public Mus musculus 8 Iqcm 23 108 98 CCDS HistoryNCBI Gene:71831Re-query CCDS DB by CCDS ID:52603.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034033.14 ENSMUSP00000034033.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034033.14Link to Ensembl Protein Viewer:ENSMUSP00000034033.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034033Re-query CCDS DB by Protein ID:ENSMUSP00000034033
Original member Current member EBI ENSMUST00000121983.1 ENSMUSP00000112901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121983.1Link to Ensembl Protein Viewer:ENSMUSP00000112901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121983Re-query CCDS DB by Protein ID:ENSMUSP00000112901
Original member Current member EBI ENSMUST00000212704.1 ENSMUSP00000148495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212704.1Link to Ensembl Protein Viewer:ENSMUSP00000148495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212704Re-query CCDS DB by Protein ID:ENSMUSP00000148495
Original member Current member NCBI NM_001164235.1 NP_001157707.1 Accepted alive Link to Nucleotide Sequence:NM_001164235.1Link to Protein Sequence:NP_001157707.1Re-query CCDS DB by Nucleotide ID:NM_001164235Re-query CCDS DB by Protein ID:NP_001157707Link to BLAST:NP_001157707.1
Original member Current member NCBI NM_027944.1 NP_082220.1 Accepted alive Link to Nucleotide Sequence:NM_027944.1Link to Protein Sequence:NP_082220.1Re-query CCDS DB by Nucleotide ID:NM_027944Re-query CCDS DB by Protein ID:NP_082220Link to BLAST:NP_082220.1

Chromosomal Locations for CCDS 52603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 75554891 75554924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75575873 75575955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75577730 75577994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75625021 75625111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75629714 75629793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75669384 75669499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75714770 75714828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75746263 75746458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75753340 75753484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75762975 75763109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75888497 75888658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75984192 75984295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGCACCTGCAGAAGCTATACCTGAAGGAGTAGGCCCTGTATTGGAAACCACCCAGCAAGATTTTTTGC
AAGAAGCAAAATCTCTTATTGCCCAACATCACAAGAGATTAAATGAGAATAAGGCTCAAGGAACGTCTAT
AGATGTCTTTAAAAATAAACACCAAAAACCGAAAACTGTCAAGTTCATACCTTTTGAGGTTAAGAAAAGT
GAAATTCTTAATGTAGTTCAAGAACATCGGTTGGTACTCAAAAGCATCAGCTATCCCAGGGACACTTCCA
AGTGCACAGCTTTAATTGAGGCCTCACAGCAGATTTCCTTCAAGGAGCCACATGTGTCGAATATAAAAGA
GAAGTGCCACCCTGTAGATCTTTTAAAAGAAGAAAAAGTTAAACTGGGTAAAATAATGAATGATATTGAA
TCCGTGAGTAAGCAAATGGAGATGGAGAAGGAGATGCATCTCAGGAAGTCCAGAATGTTGGAACCCTTCC
ATTCCCACATGAGCTTGCCTTTGCATAATCTGGCCTCTTCTCTGGGACTTCTGAAGGAACTTGCTGACAG
GACGCTTTATGATTGGAGGAGCGCTGCATTGATAAGATCTTCCTATTTGCCTCATGGATCTGCTCAAAGT
TTATCAGAGTCCTCAGTGACATTTAAGAATTATTATAAGAGACCCATTAGGAAGAAAGATCTGCAACCTA
TAAAGAAAGAACTGAAGACAGAAAAAAGGTCAAAGACTATTGCAAAGTCTGATAAAATAGACAGCAAAGT
TAAAAGAATTGGACCACACATAGAAATTTTCCAACTATTCCAGCGAAGAAACAAGACCATATTTACTAAA
AGAATTATTAAACTGGTCACCACTGTGCAAGCATTTATCAGGGGATGGCTTGAGCGCAAAAGACTTCAAC
GAATAAAGAGCAAGGTTTCGTATCATGGGCCAAATTTGAAAACAGTTATAAAAATGTATCAGTGCTTAAT
CCACCGTGTTAGACACCGACTTGGTCTTTGGAGGACAAGACAGATTATATACCTTGGAGAGTTAGAAGAA
TGGATGGATAGAAAAAAGTTCTATGAAACCATGTTTGCCAAGAGAGAAGACTGGCAAGGCCTAGAAAGAA
GTGATCTGCTGAAATACTTCAACGACTGTGGTCATTTCCCCACCCAGACCCAGATCGATGAGTACTGGGA
CCTGCTCCACAGATATGGTCAAGGAAGATATTCTGAAGTAATCAAAAAGTCCAATGCTATTGAACTATTA
TTTACACTCTACCCTCCTCAAGGTGCCAGAGTGAACATTAGCACAAGACTAAAGTCCACATGGCTGAGAC
CCTTGGTGGATGGGGAAGAAGGCTATAAGTACTTAGTGAATGGACATCCAATACTCAAGAGAGCTAACAT
CCGGACTGTTGGCAAGTTGGTGGCTCGATCCATAAGAGAAAGAAAAATGAGACAATTTTATAAAACATGA

Translation (489 aa):
MAPAEAIPEGVGPVLETTQQDFLQEAKSLIAQHHKRLNENKAQGTSIDVFKNKHQKPKTVKFIPFEVKKS
EILNVVQEHRLVLKSISYPRDTSKCTALIEASQQISFKEPHVSNIKEKCHPVDLLKEEKVKLGKIMNDIE
SVSKQMEMEKEMHLRKSRMLEPFHSHMSLPLHNLASSLGLLKELADRTLYDWRSAALIRSSYLPHGSAQS
LSESSVTFKNYYKRPIRKKDLQPIKKELKTEKRSKTIAKSDKIDSKVKRIGPHIEIFQLFQRRNKTIFTK
RIIKLVTTVQAFIRGWLERKRLQRIKSKVSYHGPNLKTVIKMYQCLIHRVRHRLGLWRTRQIIYLGELEE
WMDRKKFYETMFAKREDWQGLERSDLLKYFNDCGHFPTQTQIDEYWDLLHRYGQGRYSEVIKKSNAIELL
FTLYPPQGARVNISTRLKSTWLRPLVDGEEGYKYLVNGHPILKRANIRTVGKLVARSIRERKMRQFYKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH