NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19465.1 Public Mus musculus 5 Coq2 23 108 98 CCDS HistoryNCBI Gene:71883Re-query CCDS DB by CCDS ID:19465.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031262.8 ENSMUSP00000031262.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031262.8Link to Ensembl Protein Viewer:ENSMUSP00000031262.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031262Re-query CCDS DB by Protein ID:ENSMUSP00000031262
Original member Current member NCBI NM_027978.2 NP_082254.2 Accepted alive Link to Nucleotide Sequence:NM_027978.2Link to Protein Sequence:NP_082254.2Re-query CCDS DB by Nucleotide ID:NM_027978Re-query CCDS DB by Protein ID:NP_082254Link to BLAST:NP_082254.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082254.2 374 Q66JT7 374 100% 0 0

Chromosomal Locations for CCDS 19465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 100655298 100655471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100657818 100658006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100660172 100660305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100661837 100661922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100663580 100663701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100667892 100668058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100673989 100674241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGCTGCGCTGGGGAGGCGCGGGGCTCGCGCGGGGCCTGCGGGCCGTTCGGTCCGCATGGCTGCGAGGTC
CGCGCGGGCTCCCATTGGCCCTGGTGCGCAGCGCAGGGGTTCCGGGCGCGCGGGATCGGCGAGCCCCGGC
CCCCGGGACGCAGCGGGGCCGAGCTCTCAGCCTGTCGGCCGCGGCCGTGGTGAACTCGGCGCCCCGCCCG
CTGCAGCCCTACCTGCGCCTCATGCGCCTGGACAAGCCCATAGGAACCTGGCTGCTGTATTTGCCATGCA
CTTGGAGCATTGGTCTGGCCGCTGACCCAGGTTGTTTTCCAGACTGGTACATGTTATCACTTTTTGGCAC
TGGAGCTATTCTGATGCGTGGAGCAGGCTGTACTATTAATGACATGTGGGACCGTGACTTCGATAAAAAG
GTTACAAGGACAGCAAACCGCCCAATCGCTGCTGGAGACATTTCGACCTTCCAGTCCTTCGTCTTCCTTG
GGGGACAGCTGACCTTGGCACTGGGCGTTCTCCTGTGTTTAAACTACTACAGTATAGCAATGGGAGCAGC
GTCCTTACTTCTTGTCGTCACCTACCCACTAGTGAAAAGAATCACGTTTTGGCCTCAGTTGGCTTTGGGA
TTGACTTTTAATTGGGGTGCGTTACTCGGATGGTCTGCTGTCAAGGGCTCCTGTGATCCGGCTGTATGCC
TGCCTCTGTATTTTTCTGGAGTTATGTGGACACTGATATATGATACTATCTATGCCCACCAGGACAAGAA
AGACGATGCTCTGATCGGCCTGAAGTCCACAGCACTGCTGTTCCAGGAGAACACAAGGCAGTGGCTTAGT
GGCTTTGGGGTCGCCATGGTGGCAGCGCTGAGCCTGGCGGGAGCCAACAATGGTCAGACTGTCCCCTACT
ACGCTGCTGTGGCTGCGGTGGGAGCCCACCTGGCTCACCAGATTTACACTGTAGACATCCACAGAGCCGA
GGACTGCTGGGACAAGTTCACCTCCAACCGCACAGTAGGAATGCTCCTGTTCTTAGGGATTGTCCTTGGA
AACCTGTGCAAAGAAAAGACGGAAGAAGCAAAAGATGCTGAAGCTGTTAGAGTGGGAAGTGAGCAGACGA
GCTGA

Translation (374 aa):
MLRWGGAGLARGLRAVRSAWLRGPRGLPLALVRSAGVPGARDRRAPAPGTQRGRALSLSAAAVVNSAPRP
LQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDFDKK
VTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIAMGAASLLLVVTYPLVKRITFWPQLALG
LTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIYDTIYAHQDKKDDALIGLKSTALLFQENTRQWLS
GFGVAMVAALSLAGANNGQTVPYYAAVAAVGAHLAHQIYTVDIHRAEDCWDKFTSNRTVGMLLFLGIVLG
NLCKEKTEEAKDAEAVRVGSEQTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH