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Report for CCDS19799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19799.1 Public Mus musculus 5 Gpc2 23 108 98 CCDS HistoryNCBI Gene:71951Re-query CCDS DB by CCDS ID:19799.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19799.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161827.7 ENSMUSP00000124459.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161827.7Link to Ensembl Protein Viewer:ENSMUSP00000124459.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161827Re-query CCDS DB by Protein ID:ENSMUSP00000124459
Original member NCBI NM_172412.2 NP_766000.1 Updated not alive Link to Nucleotide Sequence:NM_172412.2Link to Protein Sequence:NP_766000.1Re-query CCDS DB by Nucleotide ID:NM_172412Re-query CCDS DB by Protein ID:NP_766000
Current member NCBI NM_172412.3 NP_766000.1 Accepted alive Link to Nucleotide Sequence:NM_172412.3Link to Protein Sequence:NP_766000.1Re-query CCDS DB by Nucleotide ID:NM_172412Re-query CCDS DB by Protein ID:NP_766000Link to BLAST:NP_766000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766000.1 579 Q8BKV1 579 100% 0 0

Chromosomal Locations for CCDS 19799.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138274310 138274569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138275455 138275624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138275707 138275846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138275929 138276075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138276208 138276338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138276584 138276746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138277407 138277487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138278215 138278537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138278839 138278997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138279649 138279814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGTCTGCGCTGCGACCTCTCCTGCTTTTGCTGCTCCATCTGTGTCCGGGTCTAGGGCCGGGACATGGGA
GTGAGGCAAAGGTCGTCCGGAGTTGTGCAGAGACTCGGCAGGTGCTGGGGGCCCGGGGATATAGCTTAAA
CCTAATCCCTCCCTCCCTCATCTCAGGTGAGCACCTTCAAGTCTGTCCTCAGGAGTACACCTGCTGTTCC
AGTGAGACAGAGCAGAAGTTGATCAGGGATGCTGAAGTCACATTCCGTGGCCTGGTAGAGGACAGTGGCT
CTTTCCTGATTCACACACTGGCTGCCCGGCATAGAAAGTTTAATGAGTTTTTTCGGGAGATGCTGTCTAT
ATCCCAGCATTCTTTGGCTCAGCTCTTCTCGCATTCCTATGGTCGCCTGTATTCCCAGCACGCCGTCATC
TTCAATAGCCTGTTTTCCGGCCTGCGGGACTACTATGAGAAGTCTGGCGAGGGGTTAGATGACACCTTGG
CGGATTTCTGGGCACAGCTCCTGGAGAGAGCCTTCCCTTTGCTGCACCCACAATACAGTTTCCCTCCTGA
CTTCCTGCTCTGTCTTACTCGGCTTACTTCAACTGCTGATGGCTCTCTGCAGCCCTTCGGAGACTCACCC
CGCCGCCTCCGCCTACAGATATCCAGGGCACTGGTGGCAGCCCGGGCCTTGGTCCAGGGTCTGGAGACTG
GAAGAAATGTGGTCAGCGAAGCACTTAAGGTACCAGTGTTGGAAGGCTGCAGACAGGCCCTGATGCGTCT
GATTGGCTGCCCTCTTTGTCGGGGAGTTCCTTCACTTATGCCCTGCCGGGGCTTCTGCCTCAATGTAGCC
CATGGCTGCCTCAGCAGTAGGGGACTGGAGCCTGAATGGGGCGGATATCTGGATGGTCTCCTGCTGCTGG
CTGAGAAACTCCAAGGACCCTTTTCCTTTGAACTGGCTGCTGAGTCCATTGGGGTGAAGATCTCAGAAGG
TTTGATGCACTTACAGGAAAACAGTGTAAAGGTGTCAGCGAAGGTGTTTCAGGAATGTGGGACCCCCCAT
CCCGTGCAGTCCCGCAGCCGGCGAGCACCAGCACCCCGAGAAGAGGCTAGCCGGTCGTGGAGGGCTTCAG
CGGAGGAAGAACGGCCCACAACAGCGGCAGGCACTAATCTGCACCGCTTGGTTTGGGAGCTCCGGGAGAG
ACTTAGCCGAGTACGGGGCTTCTGGGCTGGACTGCCTGTAACCGTATGTGGGGACTCCCGCATGGCGGCA
GATCTCTCACAGGAGACGGCACCCTGCTGGACTGGAGTTGGGAGAGGCCGGTATATGTCGCCTGTGGTCG
TGGGCTCCTTGAATGAGCAGCTCCACAACCCGGAGTTGGATACTTCGAGTCCCGATGTCCCGACGCGGAG
GCGGAGGCTACATCTCCGAGCAGCTACTGCTCGAATGAAGGCGGCTGCGCTGGGTCAGGATCTTGACATG
CATGATGCGGATGAAGATGCCAGTGGCTCTGGAGGGGGACAGCAGTATGCAGACGACTGGAAAGCTGGGG
CAGTGCCTGTGGTTCCCCCAGCCAGGCCTCCAAGGCCACCTCGTCCTCCTCGAAGGGACGGTCTTGGAGT
GAGAGGAGGAAGTGGCAGTGCCAGATACAACCAGGGCCGAAGCAGGAATCTGGGGTCATCTGTTGGCCTC
CATACCCCACTTGTCCTCCTCCTCCTTCCCTCAGCCCTGACCCTGCTTGTACTTCGATAA

Translation (579 aa):
MSALRPLLLLLLHLCPGLGPGHGSEAKVVRSCAETRQVLGARGYSLNLIPPSLISGEHLQVCPQEYTCCS
SETEQKLIRDAEVTFRGLVEDSGSFLIHTLAARHRKFNEFFREMLSISQHSLAQLFSHSYGRLYSQHAVI
FNSLFSGLRDYYEKSGEGLDDTLADFWAQLLERAFPLLHPQYSFPPDFLLCLTRLTSTADGSLQPFGDSP
RRLRLQISRALVAARALVQGLETGRNVVSEALKVPVLEGCRQALMRLIGCPLCRGVPSLMPCRGFCLNVA
HGCLSSRGLEPEWGGYLDGLLLLAEKLQGPFSFELAAESIGVKISEGLMHLQENSVKVSAKVFQECGTPH
PVQSRSRRAPAPREEASRSWRASAEEERPTTAAGTNLHRLVWELRERLSRVRGFWAGLPVTVCGDSRMAA
DLSQETAPCWTGVGRGRYMSPVVVGSLNEQLHNPELDTSSPDVPTRRRRLHLRAATARMKAAALGQDLDM
HDADEDASGSGGGQQYADDWKAGAVPVVPPARPPRPPRPPRRDGLGVRGGSGSARYNQGRSRNLGSSVGL
HTPLVLLLLPSALTLLVLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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