NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25429.1 Public Mus musculus 11 Nkiras2 23 108 98 CCDS HistoryNCBI Gene:71966Re-query CCDS DB by CCDS ID:25429.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017981.9 ENSMUSP00000017981.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017981.9Link to Ensembl Protein Viewer:ENSMUSP00000017981.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000017981Re-query CCDS DB by Protein ID:ENSMUSP00000017981
Original member Current member EBI ENSMUST00000051947.9 ENSMUSP00000059559.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051947.9Link to Ensembl Protein Viewer:ENSMUSP00000059559.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000051947Re-query CCDS DB by Protein ID:ENSMUSP00000059559
Original member Current member EBI ENSMUST00000107376.7 ENSMUSP00000102999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107376.7Link to Ensembl Protein Viewer:ENSMUSP00000102999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107376Re-query CCDS DB by Protein ID:ENSMUSP00000102999
Original member Current member NCBI NM_028024.2 NP_082300.1 Accepted alive Link to Nucleotide Sequence:NM_028024.2Link to Protein Sequence:NP_082300.1Re-query CCDS DB by Nucleotide ID:NM_028024Re-query CCDS DB by Protein ID:NP_082300Link to BLAST:NP_082300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082300.1 191 Q9CR56 191 100% 0 0

Chromosomal Locations for CCDS 25429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100624206 100624299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100624943 100625184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100625994 100626233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGGAAGAGCTGCAAGGTGGTCGTGTGCGGCCAGGCATCTGTGGGCAAAACTTCAATCCTTGAGCAGC
TTCTGTACGGGAACCATGTCGTGGGTTCTGAGATGATCGAGACCCAGGAGGACATCTATGTAGGCTCCAT
CGAGACAGACCGAGGGGTGCGGGAGCAGGTGCGTTTCTATGATACACGGGGTCTCCGGGATGGGGCCGAG
CTGCCCAAGCACTGCTTCTCCTGCACCGATGGCTACGTCCTGGTCTACAGCACAGACAGCCGAGAGTCGT
TCCAGCGCGTCGAGCTGCTCAAGAAGGAGATCGACAAGTCCAAGGACAAGAAGGAGGTCACCATCGTGGT
CCTTGGCAACAAGTGTGACCTGCAGGAGCAGCGTCGCGTAGACCCTGACGTGGCCCAGCACTGGGCCAAG
TCCGAGAAGGTGAAGCTATGGGAGGTGTCGGTGGCTGACCGACGCTCCCTCCTAGAGCCTTTCATCTACC
TGGCCAGCAAGATGACCCAGCCGCAGAGCAAGTCTGCCTTCCCCCTCAGCCGCAAGAACAAGGGCAGCGG
CTCCTTGGATGGCTGA

Translation (191 aa):
MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAE
LPKHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAK
SEKVKLWEVSVADRRSLLEPFIYLASKMTQPQSKSAFPLSRKNKGSGSLDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH