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Report for CCDS22735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22735.1 Public Mus musculus 8 Zc3h18 23 108 98 CCDS HistoryNCBI Gene:76014Re-query CCDS DB by CCDS ID:22735.1Re-query CCDS DB by GeneID:76014See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017622.11 ENSMUSP00000017622.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017622.11Link to Ensembl Protein Viewer:ENSMUSP00000017622.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000017622Re-query CCDS DB by Protein ID:ENSMUSP00000017622
Original member Current member NCBI NM_001029993.1 NP_001025164.1 Accepted alive Link to Nucleotide Sequence:NM_001029993.1Link to Protein Sequence:NP_001025164.1Re-query CCDS DB by Nucleotide ID:NM_001029993Re-query CCDS DB by Protein ID:NP_001025164Link to BLAST:NP_001025164.1

Chromosomal Locations for CCDS 22735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122383414 122384004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122386862 122386946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122387693 122387764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122397818 122397966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122398236 122398328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122399005 122399162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122401591 122401708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122403151 122403419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122407332 122407523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122408243 122408368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122410881 122410985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122411284 122411427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122411638 122411703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122412990 122413150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122413263 122413462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122413857 122413950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122416036 122416132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122416476 122416674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2919 nt):
ATGGATGTGGCCGAGAGCCCTGAACTGGATCCTCACTCCCCAGAGGATGAAGAGCAGCCGGCACTCTCAG
ATGATGACATTCTAAGAGAAAGTGGATCTGAACAAGATTTGGATGGAGCTGGGGAAAGGGCGTCTGATTT
GGAGGAGGAGGAAAATGCAACCAGGGTACAAAGCCAGGAGGAGACTCGCTCGGATGAGGAAGACCGAGCC
AGTGAGCCCAAGTCCCAAGATCAGGACTCAGAGGCTCATGAGCTGAGCAGGGGCCCAGCGGGATCCCCAT
GCGAGGAGGGGGATGATGTTGAGGAAGATGGGACAAGTGACCTCAGGGACGAAGCCTCCTCGGTGACCCG
GGAACTGGATGAGCATGAACTAGACTATGATGAGGAGGTCCCTGAGGAGCCAGCTCCTGCTGCCCAGGAG
GAGGAGGCTGAGAAGGCTGGGGCTGAGGAGGAGGAGGAGAAGGGGGAAGGGGCTCCCGGAGAGGAAGGGA
AGCCTGATGTTCAAAGTGTGGGAGAACAAGAACCCACAGAAGCTGCCAAGGAGAAGAAGAAAGAGGATGA
CGACGGGGAGATCGATGATGGCGAGATAGACGATGATGACTTGGAGGAAGGCGAGGTGAAGGACCCCAGT
GACCGGAAGGTGAGGCCTCGCCCCACCTGCCGATTCTTCATGAAAGATGTTGTGACACCATTATCCACTC
TTCTTCCACCAATACCAAATTCCATACCACTCAGAGGCCAGGTTAAAGGAAACTGCACGTGGGGAATGAG
CTGTAGGTTTATCCACCCTGGAGTGAATGACAAAGGCAACTACTCCCTCATCACCAAAGCGGAACCTTTT
CCACCCAACGGTGCCCCGCCTCTTGGACCTCACCCACTGATGCCTGCCAACCCTTGGGGTGGGCCAGTGG
TTGATGAAATTTTGCCTCCACCCCCTCCAGAGCCCCCAACAGAGAGCGCCTGGGAACGTGGACTCCGACA
TGCAAAAGAGGTTTTAAAAAAAGCAACCATTCGGAAAGAGCAGGAGCCCGACTTTGAAGAAAAAAGGTTC
ACAGTAACCATTGGTGAAGACGACCGGGAGTTTGACAAGGAGAATGAAGTCTTCCGAGATTGGAATTCTC
GAGTCCCGAGAGATGTCAGAGACACAACACTTGAGCCTTATGCAGACCCTTATTATGACTATGAGATAGA
ACGGTTTTGGCGTGGTGGACAGTACGAGAATTTCAGGGTGCAGTATACAGAAGCAGAACCGTATCATAAC
TATCGCGAACGAGAGAGGGAACGAGAGCGAGAAAACAGACAACGAGAACGCGAGCGGGAACGAGAGCGTG
ACCGAGAGCGGGAGCGCAGGCAGAGAGAGCGGGAGCGAGAACGGGAACGAGAGCGGGACAAGGAGCGGCA
GCGGAGGAAAGAGGAGTGGGAGAGAGAGAGAGCCAAGCGAGACGAGAAGGACCGGCAACACCGAGACCGA
GACAGGGACAAGGACCGGGAGAAGGACAAGGAGAAGCCGAAGCCCAGGTCCCCACAGCCACCGAGCCGTC
AAGCTGAACCACCAAAGAAGGAGAGCACCTCTGTGGGGCCCCAGGTGAAGCGAGCCGATGAGTGGAAGGA
CCCCTGGCGCCGATCCAAGTCTCCCAAGAAGAAGCTTGGCGTGTCCGTCTCCCCAAGCCGGGCACGAAGA
CGTCGCAAAACCTCCGCCTCCTCAGCCTCTGCTTCCAATTCCTCCAGGTCATCGTCACGGTCTTCATCCT
ACTCTGGCTCTGGCTCGTCCCGCTCCCGCTCCCGCTCCTCCTCCTACAGCTCCTATTCTAGCCGCTCTTC
CAGACACAGCTCGTTCTCAGGCAGCCGATCCAGGTCCCGGTCCTTCTCCTCGTCCCCATCCCCGTCTCCC
ACACCTTCCCCACACAGACCTCCAGTCAGAACCAAGGGGGAGCCGGCCCCACCTCCTGGGAAAGCAGGGG
AGAAGTCAATAAAGAAGCCAGCCCCTCCCCCAGCCCCACCACAGGCCACCAAAACTACTGCTCCTGGTCC
TGAGCCTGCCAAACCTGGAGATCTCCGAGAAGCCAGGAGAAAGGAGCGGCAAACCAGGACTCCCCCAAGG
AGGCGGACGCTCAGCGGCAGTGGTAGCGGCAGTGGTAGCAGCTACAGTGGCTCCAGTTCCCGATCCAGGT
CTCTGAGTGTGAGCAGCGTTTCCTCAGTGTCCAGCGCCACCTCGAGTAGCAGCTCAGTGCACAGTGTGGA
CTCAGATGACATGTATGCAGACCTGGCCAGTCCTGTGTCCTCAGCCAGCTCTCGATCCCCAACTCCTGCC
CAGACCAAGAAGGAGAGAGGGAAATCCAAGAAAGAAGACGGAGTGAGAGAGGAAAAGCGGAGGCGGGACC
CATCCGCGCAGCCGCCCAAGTCCTCTAAAGCTCCAGCGGGTGGGAAGGCCTCCCAGCAGGCAGCGGCGCC
TCAGCCGGCGGTCCCCGGGCAGCCCCAACAGGGCTCCTTTGTTGCCCACAAGGAGATAAAGCTGACACTG
CTGAACAAGGCGGCTGATAAAGGAAGCCGGAAGCGCTATGAGCCATCAGACAAGGACCGGCAGAGCCCTC
CTGCCAAGAAGGCCAACTTGTCCCCAGACCGAGGTTCTCGAGACCGGAAATCAGGTGGAAGAATGGGCTC
CCCAAAACCAGAGAGGCAGAGAGGCCAGAACGCTAAAGCTCCTGCTGCCCCAGCGGACAGGAAGCGTCCA
CTGTCACCCCAGTCTAAGGGCTCCAGCAAGGTCACCAGCGTGCCTGGCAAAGCCACAGATACTGCCACAG
CAGGCACCAAGTCAGGGAAGGCCAGCACATTGTCACGGCGAGAGGAGCTCCTTAAACAGCTCAAAGCGGT
TGAGGACGCCATCGCTCGCAAGCGGGCCAAGATCCCCGGGAAAGTGTAG

Translation (972 aa):
MDVAESPELDPHSPEDEEQPALSDDDILRESGSEQDLDGAGERASDLEEEENATRVQSQEETRSDEEDRA
SEPKSQDQDSEAHELSRGPAGSPCEEGDDVEEDGTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQE
EEAEKAGAEEEEEKGEGAPGEEGKPDVQSVGEQEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPS
DRKVRPRPTCRFFMKDVVTPLSTLLPPIPNSIPLRGQVKGNCTWGMSCRFIHPGVNDKGNYSLITKAEPF
PPNGAPPLGPHPLMPANPWGGPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRF
TVTIGEDDREFDKENEVFRDWNSRVPRDVRDTTLEPYADPYYDYEIERFWRGGQYENFRVQYTEAEPYHN
YRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWERERAKRDEKDRQHRDR
DRDKDREKDKEKPKPRSPQPPSRQAEPPKKESTSVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARR
RRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSP
TPSPHRPPVRTKGEPAPPPGKAGEKSIKKPAPPPAPPQATKTTAPGPEPAKPGDLREARRKERQTRTPPR
RRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSDDMYADLASPVSSASSRSPTPA
QTKKERGKSKKEDGVREEKRRRDPSAQPPKSSKAPAGGKASQQAAAPQPAVPGQPQQGSFVAHKEIKLTL
LNKAADKGSRKRYEPSDKDRQSPPAKKANLSPDRGSRDRKSGGRMGSPKPERQRGQNAKAPAAPADRKRP
LSPQSKGSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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