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Report for CCDS18618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18618.1 Public Mus musculus 4 Ndufs5 23 108 98 CCDS HistoryNCBI Gene:595136Re-query CCDS DB by CCDS ID:18618.1Re-query CCDS DB by GeneID:595136See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030401.13 ENSMUSP00000030401.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030401.13Link to Ensembl Protein Viewer:ENSMUSP00000030401.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030401Re-query CCDS DB by Protein ID:ENSMUSP00000030401
Original member Current member EBI ENSMUST00000106206.7 ENSMUSP00000101812.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106206.7Link to Ensembl Protein Viewer:ENSMUSP00000101812.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106206Re-query CCDS DB by Protein ID:ENSMUSP00000101812
Original member Current member EBI ENSMUST00000106207.7 ENSMUSP00000101813.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106207.7Link to Ensembl Protein Viewer:ENSMUSP00000101813.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106207Re-query CCDS DB by Protein ID:ENSMUSP00000101813
Original member Current member NCBI NM_001030274.1 NP_001025445.1 Accepted alive Link to Nucleotide Sequence:NM_001030274.1Link to Protein Sequence:NP_001025445.1Re-query CCDS DB by Nucleotide ID:NM_001030274Re-query CCDS DB by Protein ID:NP_001025445Link to BLAST:NP_001025445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025445.1 106 Q99LY9 106 100% 0 0

Chromosomal Locations for CCDS 18618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 123712822 123712926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123715864 123716079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGCCTTTCCTTGACATACAGAAAAAGCTGGGCATCAGCCTGGACCGGCACTTTATGTTCCTAAGCGCAG
AACAGCCCTATAAGAACGCCGCTCGGTGCCACGCATTTGAAAAAGAGTGGATAGAGTGTGCACACGGGAT
CGGTGGGACCCGGGCGAAAAAGGAGTGCAAGATAGAGTTCGATGACTTCGAAGAGTGCTTGCTTCGGTAC
AAAACGATGAGGCGAATGCATGATATCAAGAAACAGCGGGAGAAGCTAATGAAAGAGGGCAAATACACCC
CTCCACCTCACCATTCGGGCAGGGAGGAGCCCAGGCCCTGA

Translation (106 aa):
MPFLDIQKKLGISLDRHFMFLSAEQPYKNAARCHAFEKEWIECAHGIGGTRAKKECKIEFDDFEECLLRY
KTMRRMHDIKKQREKLMKEGKYTPPPHHSGREEPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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