NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49195.1 Public Mus musculus 12 Brf1 23 108 98 CCDS HistoryNCBI Gene:72308Re-query CCDS DB by CCDS ID:49195.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49195.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011302.8 ENSMUSP00000011302.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011302.8Link to Ensembl Protein Viewer:ENSMUSP00000011302.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000011302Re-query CCDS DB by Protein ID:ENSMUSP00000011302
Original member Current member NCBI NM_028193.3 NP_082469.2 Accepted alive Link to Nucleotide Sequence:NM_028193.3Link to Protein Sequence:NP_082469.2Re-query CCDS DB by Nucleotide ID:NM_028193Re-query CCDS DB by Protein ID:NP_082469Link to BLAST:NP_082469.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082469.2 676 Q8CFK2 676 99.7041% 0 2

Chromosomal Locations for CCDS 49195.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112960321 112960358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112961110 112961281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112961723 112961774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112962376 112962632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112963377 112963432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112963510 112963591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112964184 112964245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112965729 112965992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112969265 112969357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112969442 112969481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112970097 112970223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112972262 112972355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112973472 112973621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112979685 112979757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112983027 112983056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112987917 112988092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112993064 112993144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113000173 113000356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGACGGGCCGCGTCTGCCGCGGCTGCGGCGGCACGGACATCGAGTTGGATGCGGCGCGCGGCGATGCGG
TGTGCACGGGCTGCGGCTCGGTGCTCGAGGACAACATCATCGTGTCCGAGGTGCAGTTCGTGGAGAACAG
CGGCGGCGGCTCGTCGGCGGTCGGCCAGTTCGTGTCGCTGGACGGTGCTGGGAAAACCCCAACCCTAGGA
GGTGGCTTTCACGTGAACTTGGGAAAGGAATCAAGAGCACAGACCCTGCAGAATGGGCGGCGCCACATCC
ACCACCTGGGGAGCCAGCTGCAGCTAAACCAGCACTGCCTGGACACAGCATTCAATTTCTTCAAGATGGC
TGTAAGCAAGCATCTTACCCGAGGACGGAAAATGGCCCATGTGATTGCTGCCTGCCTCTACTTGGTTTGC
CGAACTGAAGGCACACCTCATATGCTCCTTGACCTCAGCGACTTGCTCCAGGTTAACGTGTATGTGTTGG
GGAAGACGTTCCTGCTCTTGGCGAGGGAGCTTTGCATCAACGCACCAGCTATAGACCCATGCTTGTACAT
TCCACGCTTTGCTCATCTGCTGGAGTTTGGGGAGAAGAACCATGAAGTATCCATGACAGCCTTGAGGCTT
CTGCAGAGAATGAAAAGGGATTGGATGCACACGGGCCGGCGCCCCTCCGGCCTCTGTGGAGCAGCACTTT
TGGTTGCAGCCAGAATGCATGACTTCCGGAGAACGGTCAAAGAAGTCATCAGTGTGGTCAAAGTATGTGA
GTCCACACTACGGAAGAGGCTCACAGAATTTGAAGACACTCCAACCAGTCAGCTCACTATTGATGAGTTT
ATGAAGATTGACTTGGAGGAAGAGTGCGACCCTCCCTCGTACACAGCTGGCCAGAGGAAGCTTCGCATGA
AGCAGCTGGAACAGGTCCTATCAAAAAAGCTAGAAGAAGTTGAAGGTGAAATATCCAGTTACCAGGATGC
CATTGAAATTGAGCTAGAAAACAGTCGACCAAAAGCAAAAGGGGCTCTGGCCAACTTGTCAAAGGATGGC
TCCGGTGAGGACGCCACATCCAGTCCACGCTGTGAGGAAGACACTGAGGATGAGGAGCTGGAGGCTGCTG
CCAGCCACATGAACAAGGACTTCTACCGAGAGCTCCTCGGGGACGATGACGGCTCGGAGGCAGCAGGAGA
CCCTGATGGGGGCAGCAGACCCCTCGCCCTGGAGTCCCTACTTGGTCCCCTGCCCACAGCAGCCAGCCTG
GGCATCTCCGACTCCATCCGAGAGTGCATCTCCTCCCCAAGTGGGGACCCCAAAGACTCTTCAGGGGACG
GGGAGCTGGACCTCAGTGGCATCGATGACCTTGAGATTGACAGATACATCTTGAATGAGTCAGAAGCCCG
AGTAAAAGCTGAGTTGTGGATGCGGGAGAATGCTGAGTACCTGCGGGAGCAGAAGGAGAAAGAAGCAAGA
ATAGCGAAGGAGAAGGAGCTTGGCATCTATAAGGAGCACAAGCCCAAGAAGTCTTGCAAACGCCGGGAGC
CAATCCTGGCCAGCACAGCTGGGGAGGCTATTGAGAAGATGCTGGAACAGAAGAAAATCTCCAGCAAGAT
CAACTACAGTGTGCTGCGGGACCTTAACAGCAAGGGTGGAGGCAGCCCACCCAGGGACGACTCACAGCCC
CCAGAGCGTGCCAGCACCAAGAAGCTGTCACGGAGGAAAAGAGCAACTACCAGAAATAGTGCTGATCCTG
GGACAAGCACAGGGAAGAGGTTGAGGCCTCTGCTGTCTGCCCAGCCGGCGAAGAAGGCAGCCGTGGGAGA
GGCCTTACTCTTAAGTTCTCCTGCCTTGGGAGCAGAGCCAATCAAGCCATCAGCAGTCTTGGTAGAGAGT
GGCCCTGTGTCGTACCATCCTGAGGAGGATGCAGATGAGGAGGACGCCGAGGACGAGGATGGAGAGCCCT
GCGTCAGTGCTCTGCAGATGATGGGTGGCAATGATTACGGCTGTGATGGTGATGAAGATGATGGCTACTG
A

Translation (676 aa):
MTGRVCRGCGGTDIELDAARGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLG
GGFHVNLGKESRAQTLQNGRRHIHHLGSQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVC
RTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRL
LQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEF
MKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLSKDG
SGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAAGDPDGGSRPLALESLLGPLPTAASL
GISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEAR
IAKEKELGIYKEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDLNSKGGGSPPRDDSQP
PERASTKKLSRRKRATTRNSADPGTSTGKRLRPLLSAQPAKKAAVGEALLLSSPALGAEPIKPSAVLVES
GPVSYHPEEDADEEDAEDEDGEPCVSALQMMGGNDYGCDGDEDDGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH