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Report for CCDS21683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21683.1 Public Mus musculus 7 Or6a2 23 108 98 CCDS HistoryNCBI Gene:18317Re-query CCDS DB by CCDS ID:21683.1Re-query CCDS DB by GeneID:18317See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094109.2 ENSMUSP00000091656.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094109.2Link to Ensembl Protein Viewer:ENSMUSP00000091656.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000094109Re-query CCDS DB by Protein ID:ENSMUSP00000091656
Original member Current member EBI ENSMUST00000207280.3 ENSMUSP00000146957.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207280.3Link to Ensembl Protein Viewer:ENSMUSP00000146957.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207280Re-query CCDS DB by Protein ID:ENSMUSP00000146957
Original member Current member EBI ENSMUST00000208147.2 ENSMUSP00000147026.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208147.2Link to Ensembl Protein Viewer:ENSMUSP00000147026.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000208147Re-query CCDS DB by Protein ID:ENSMUSP00000147026
Original member Current member EBI ENSMUST00000211432.2 ENSMUSP00000147893.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211432.2Link to Ensembl Protein Viewer:ENSMUSP00000147893.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000211432Re-query CCDS DB by Protein ID:ENSMUSP00000147893
Original member Current member EBI ENSMUST00000214105.1 ENSMUSP00000149104.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214105.1Link to Ensembl Protein Viewer:ENSMUSP00000149104.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214105Re-query CCDS DB by Protein ID:ENSMUSP00000149104
Original member Current member EBI ENSMUST00000216375.1 ENSMUSP00000150093.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216375.1Link to Ensembl Protein Viewer:ENSMUSP00000150093.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216375Re-query CCDS DB by Protein ID:ENSMUSP00000150093
Original member Current member NCBI NM_010983.2 NP_035113.1 Accepted alive Link to Nucleotide Sequence:NM_010983.2Link to Protein Sequence:NP_035113.1Re-query CCDS DB by Nucleotide ID:NM_010983Re-query CCDS DB by Protein ID:NP_035113Link to BLAST:NP_035113.1

Chromosomal Locations for CCDS 21683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 107000875 107001858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGAGCGAAGGAACCACACTGGGAGAGTGAGTGAATTTGTGTTGCTGGGTTTCCCAGCTCCTGCCCCAC
TGCGGGCACTACTATTTTTCCTTTCTCTGTTGGCCTACGTGTTGGTGCTGACTGAAAACATACTCATCAT
TACAGCAATTAGGAACCACCCCACCCTCCACAAACCCATGTATTTTTTCTTGGCTAATATGTCATTCCTG
GAGATTTGGTATGTCACTGTTACGATTCCTAAGATGCTTGCTGGCTTCATTGGTTCCGAGGAGAATCATG
GACAGCTGATCTCCTTTGAGGCATGCATGACACAGCTCTACTTTTTCCTAGGCTTGGGTTGCACAGAGTG
TGTCCTTCTTGCTGTCATGGCCTATGACCGCTATGTGGCCATCTGTCACCCACTCCACTATCCTGTCATT
GTCAGTAGCCGGCTATGTGTGCAGATGGCAGCTGGATCCTGGGCTGGAGGTTTTGGTATCTCCATGGTTA
AAGTTTTCCTCATTTCTCGCCTGTCTTACTGTGGCCCCAACACCATCAACCACTTTTTCTGTGATGTTTC
TCCATTGCTCAACTTGTCATGCACTGACATGTCCACAGCAGAGCTTACAGACTTTATCCTGGCCATTTTT
ATTCTGCTGGGGCCACTCTCTGTCACTGGGGCTTCCTATATGGCCATCACAGGTGCAGTGATGCGCATCC
CCTCAGCTGCTGGCCGCCATAAGGCCTTTTCAACCTGTGCCTCCCACCTCACTGTTGTGATTATCTTCTA
TGCAGCCAGTATTTTCATCTATGCCAGGCCTAAGGCACTCTCAGCTTTTGACACCAACAAGCTGGTCTCT
GTACTCTACGCTGTCATTGTACCATTGCTCAATCCCATCATCTACTGCTTGCGCAATCAAGAAGTCAAAA
AAGCCCTACGTCGCACTCTGCACCTGGCCCAAGGCCAGGACGCCAATACCAAGAAATCCAGCAGAGATGG
TTAG

Translation (327 aa):
MERRNHTGRVSEFVLLGFPAPAPLRALLFFLSLLAYVLVLTENILIITAIRNHPTLHKPMYFFLANMSFL
EIWYVTVTIPKMLAGFIGSEENHGQLISFEACMTQLYFFLGLGCTECVLLAVMAYDRYVAICHPLHYPVI
VSSRLCVQMAAGSWAGGFGISMVKVFLISRLSYCGPNTINHFFCDVSPLLNLSCTDMSTAELTDFILAIF
ILLGPLSVTGASYMAITGAVMRIPSAAGRHKAFSTCASHLTVVIIFYAASIFIYARPKALSAFDTNKLVS
VLYAVIVPLLNPIIYCLRNQEVKKALRRTLHLAQGQDANTKKSSRDG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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