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Report for CCDS8113.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8113.2 Public Homo sapiens 11 SNX32 24 110 108 CCDS HistoryNCBI Gene:254122Re-query CCDS DB by CCDS ID:8113.2Re-query CCDS DB by GeneID:254122See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8113.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308342.7 ENSP00000310620.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308342.7Link to Ensembl Protein Viewer:ENSP00000310620.6Re-query CCDS DB by Nucleotide ID:ENST00000308342Re-query CCDS DB by Protein ID:ENSP00000310620
Original member Current member NCBI NM_152760.3 NP_689973.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152760.3Link to Protein Sequence:NP_689973.2Re-query CCDS DB by Nucleotide ID:NM_152760Re-query CCDS DB by Protein ID:NP_689973Link to BLAST:NP_689973.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689973.2 403 Q86XE0-1 403 100% 0 0

Chromosomal Locations for CCDS 8113.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65834066 65834101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65849478 65849582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65849920 65850030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65850150 65850271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65850431 65850554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65850751 65850855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65851055 65851160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65851328 65851403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65851640 65851679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65852465 65852551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65852630 65852789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65852873 65852958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65853282 65853335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGAGACGTATGCGGAGGTTGGGAAGGAGGGCAAGCCTTCCTGTGCATCGGTGGATCTGCAGGGAGACA
GCTCCTTACAGGTGGAGATTTCTGACGCAGTGAGTGAGCGGGACAAGGTGAAATTCACTGTTCAAACAAA
GAGCTGCCTCCCTCACTTCGCCCAGACCGAGTTCTCAGTCGTGCGGCAGCACGAGGAGTTCATCTGGCTG
CATGATGCCTACGTGGAGAATGAGGAGTACGCCGGCCTCATCATCCCCCCAGCCCCTCCGAGGCCAGACT
TTGAGGCTTCGAGGGAAAAGCTACAGAAATTGGGCGAGGGGGACAGCTCTGTCACTCGGGAAGAGTTTGC
CAAGATGAAGCAGGAGCTGGAAGCGGAGTACCTGGCCATCTTTAAGAAGACAGTTGCGATGCACGAAGTC
TTTCTGCAGCGCCTGGCGGCCCACCCCACCCTGCGTCGAGACCACAACTTCTTTGTGTTTTTGGAATATG
GACAGGATCTGAGTGTCCGGGGGAAGAACAGGAAGGAGCTCCTCGGAGGGTTTCTGAGGAATATTGTGAA
GTCCGCGGATGAAGCCCTCATCACGGGCATGTCAGGGCTCAAGGAGGTGGATGACTTCTTTGAGCATGAG
AGGACCTTCCTGTTGGAGTATCACACCCGTATCCGAGATGCCTGCCTGCGGGCCGACCGCGTCATGCGCG
CCCACAAGTGCCTGGCAGACGATTATATCCCTATCTCAGCTGCGCTGAGCAGTCTGGGAACACAGGAAGT
CAACCAGCTAAGGACGAGCTTCCTCAAATTGGCAGAGCTCTTTGAACGGCTGAGGAAGCTGGAGGGCCGG
GTGGCTTCCGATGAGGACCTGAAGCTGTCAGACATGCTGAGGTACTACATGCGTGACTCACAGGCAGCCA
AGGACCTGCTGTACCGGCGGCTGCGGGCACTGGCCGACTACGAGAATGCCAACAAGGCGCTGGACAAGGC
GCGCACCAGGAACCGGGAGGTGCGGCCCGCCGAGAGCCACCAGCAGCTGTGCTGCCAACGCTTCGAGCGC
CTCTCCGACTCCGCCAAGCAAGAGCTCATGGACTTCAAGTCCCGCCGGGTCTCCTCTTTTCGAAAGAATC
TCATTGAGCTGGCAGAGCTGGAGCTCAAACACGCCAAGGCCAGCACCCTGATTCTCCGGAACACCCTTGT
TGCCCTAAAGGGGGAGCCTTAG

Translation (403 aa):
METYAEVGKEGKPSCASVDLQGDSSLQVEISDAVSERDKVKFTVQTKSCLPHFAQTEFSVVRQHEEFIWL
HDAYVENEEYAGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEV
FLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDDFFEHE
RTFLLEYHTRIRDACLRADRVMRAHKCLADDYIPISAALSSLGTQEVNQLRTSFLKLAELFERLRKLEGR
VASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKARTRNREVRPAESHQQLCCQRFER
LSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLILRNTLVALKGEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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