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Report for CCDS39401.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39401.2 Public Mus musculus 5 Pan3 23 108 98 CCDS HistoryNCBI Gene:72587Re-query CCDS DB by CCDS ID:39401.2See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39401.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The upstream in-frame AUG is conserved in all mammals with available genomic sequences in this region. and results in a 146aa-longer protein, but the splice sites are unaffected.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39401.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031651.14 ENSMUSP00000031651.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031651.14Link to Ensembl Protein Viewer:ENSMUSP00000031651.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031651Re-query CCDS DB by Protein ID:ENSMUSP00000031651
Original member NCBI NM_028291.5 NP_082567.3 Updated not alive Link to Nucleotide Sequence:NM_028291.5Link to Protein Sequence:NP_082567.3Re-query CCDS DB by Nucleotide ID:NM_028291Re-query CCDS DB by Protein ID:NP_082567
Current member NCBI NM_028291.6 NP_082567.3 Accepted alive Link to Nucleotide Sequence:NM_028291.6Link to Protein Sequence:NP_082567.3Re-query CCDS DB by Nucleotide ID:NM_028291Re-query CCDS DB by Protein ID:NP_082567Link to BLAST:NP_082567.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082567.3 837 Q640Q5-1 837 100% 0 0

Chromosomal Locations for CCDS 39401.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147430580 147431009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147450653 147450774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147453252 147453318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147455118 147455188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147488111 147488258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147519505 147519752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147521830 147521934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147523176 147523233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147526519 147526680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147526925 147527041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147527129 147527230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147529955 147530120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147531217 147531307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147536401 147536540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147539243 147539372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147539742 147539806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147543070 147543208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147545606 147545735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147546365 147546387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGAACAGTGGCGGCGGCGGTGGCCTCCCGCCGCCCTCGGCCGCTGCCTCGCCGTCGTCGTCCTCGCTGG
CGGCGGCCGTGGCGGTGGCGGTGGCGGCCTCGTCGGGCGTCGGGGGCGTCCCCGGCGGGCCGGCGGCGGC
GGCGGGCGTGAAGCTCAAGTACTGCCGCTACTACGCCAAGGACAAGACGTGCTTCTACGGCGAGGAGTGT
CAGTTCCTGCACGAGGACCCAGCCGCCGGCGCGGCCCCGGGGCTTGGCCTCCATAGCAACAGCGTCCCGC
TGGCGCTAGCGGCCGCGGCCGGGGCCGCCTTTCCTCCGGGAGCGCTCCCGGGCGGGGGAGCGGGGCCGCC
CGCGGGGCCCAAGAAGCCGGAGCTGGGCGTCCCGGGGGCGGCGACCGCGGGCGGCGGACTCGATGGCCCG
CGGGTGGCGATTCCGGGAATGGATGGAGGTGCTTTAACTGATGCGAGTCTCACAGAGTCCTATTTCAGCA
CCAGCTTTATTGGAGTCAATGGATTTGGAAGCCCTGTAGAAACAAAGTATCCCTTGATGCAGAGAATGAC
TAGTAGTAGCAGCTCCCCAAGCCTTCTAAATGACAGTGCCAAGCCATACACAGGCCACGATCTTCTGACT
TCATCTGCTTCATCCTTGTTTAATGACTTCGGTGCCCTCAACATCTCCCAGAGAAGGAAGACACCAAATC
CTACTGCAAGCGAATTTATACCTAAAGGAGGATCAACCTCCAGGCTGAGTAACGTGTCCCAGTCAAATAT
GTCTGCCTTCTCTCAAGTTTTCTCTCACCCATCCATGGGAAGTCCTGCTACTGCTGGATTAGCACCAGGA
ATGTCACTGTCTGCTGGATCTTCCCCTCTCCATTCCCCCAAAATTACTCCACACACCTCTCCTGCTCCTA
GAAGAAGAAGCCACACTCCAAACCCAGCAAGTTTCATGGTGCCGCCTAGTGCCTCCACTCCTGCCAATAA
CCCTGCTCCTCAGCCTCCGTCCTCTGGTCAGGTGATCCAGAAGGAGACTGTCGGGGGGACGACTTACTTC
TATACAGATACAACCCCAGCACCTTTGACTGGAATGGTATTTCCAAACTATCATATTTATCCTCCAACCG
CACCTCATGTTGCTTATATGCAACCAAAAGCAAATGCACCTTCCTTCTTCATGGCCGACGAGCTCCGACA
GGAGCTGATCAACAGACATTTAATAACGATGGCTCAAATTGACCAAGCAGATATGCCAGCAGTCCCCACA
GAAGTTGACAGCTACCATAGCCTGTTCCCTCTAGAACCACTGCCACCTCCCAACCGGATACAGAAATCAA
GTAATTTTGGATATATCACGTCTTGCTACAAAGCTGTAAATAGCAAAGATGATCTGCCATATTGCCTTCG
GAGGATACATGGTTTTCGTCTTGTTAACACAAAGTGCATGGTGTTGGTTGATATGTGGAAAAAAATTCAG
CACTCAAATATTGTAACTCTGCGTGAAGTGTTTACCACTAAAGCATTTGCCGAGCCTTCTCTGGTGTTCG
CCTATGATTTCCATGCTGGAGGAGAAACTATGATGAGCAGACACTTTAACGACCCGAATTCTGATGCCTA
CTTCACAAAGAGGAAGTGGGGCCAGCACGATGGACCACTGCCCAGGCAGCATGCTGGATTGTTACCAGAG
TCTCTCATCTGGGCATACATTGTACAGCTGAGTTCTGCTCTGCGGACCATTCATACAGCAGGTTTGGCCT
GTAGAGTAATGGACCCAACGAAGATTCTGATAACCAGCAAAACAAGGTTACGAGTAAATTGTGTAGGAGT
CTTTGATGTTTTAACATTTGATAACAGTCAAAATAATAATCCTTTGGCATTAATGGCTCAGTACCAGCAA
GCAGATCTGATATCATTAGGAAAAGTTGTGTTGGCTTTGGCTTGCAACTCTTTGGCAGGAATTCAGCGAG
AAAATTTACAGAAAGCCATGGAATTGGTGACAATCAACTACTCCTCTGACCTGAAGAACCTCATCTTGTA
CTTGTTGACTGACCAAAACAGGATGCGGAGTGTGAATGACATCATGCCCATGATTGGTGCTCGGTTTTAC
ACTCAATTGGATGCTGCTCAAATGAGAAATGATGTTATCGAGGAAGACCTTGCTAAGGAGGTTCAAAATG
GAAGACTGTTTAGGCTTCTAGCAAAATTGGGAACAATCAACGAGAGGCCGGAGTTTCAGAAGGATCCAAC
CTGGTCAGAGACTGGAGACAGATACCTGTTGAAACTCTTTAGAGATCATCTTTTTCATCAGGTGACAGAA
GCAGGTGCTCCCTGGATCGACCTCAGTCACATCATTTCTTGTCTTAACAAGCTAGATGCTGGTGTGCCAG
AAAAAATCAGCCTGATTTCCAGAGACGAGAAGAGCGTGCTGGTGGTGACATACAGTGACCTAAAACGCTG
CTTTGAAAATACCTTTCAAGAACTGATTGCGGCTGCAAATGGTAACGATCGGAACAGTAACTGA

Translation (837 aa):
MNSGGGGGLPPPSAAASPSSSSLAAAVAVAVAASSGVGGVPGGPAAAAGVKLKYCRYYAKDKTCFYGEEC
QFLHEDPAAGAAPGLGLHSNSVPLALAAAAGAAFPPGALPGGGAGPPAGPKKPELGVPGAATAGGGLDGP
RVAIPGMDGGALTDASLTESYFSTSFIGVNGFGSPVETKYPLMQRMTSSSSSPSLLNDSAKPYTGHDLLT
SSASSLFNDFGALNISQRRKTPNPTASEFIPKGGSTSRLSNVSQSNMSAFSQVFSHPSMGSPATAGLAPG
MSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPASFMVPPSASTPANNPAPQPPSSGQVIQKETVGGTTYF
YTDTTPAPLTGMVFPNYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPT
EVDSYHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQ
HSNIVTLREVFTTKAFAEPSLVFAYDFHAGGETMMSRHFNDPNSDAYFTKRKWGQHDGPLPRQHAGLLPE
SLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITSKTRLRVNCVGVFDVLTFDNSQNNNPLALMAQYQQ
ADLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTDQNRMRSVNDIMPMIGARFY
TQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTE
AGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGNDRNSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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