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Report for CCDS57154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57154.1 Public Mus musculus 2 Skida1 23 108 98 CCDS HistoryNCBI Gene:72668Re-query CCDS DB by CCDS ID:57154.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091420.5 ENSMUSP00000088982.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091420.5Link to Ensembl Protein Viewer:ENSMUSP00000088982.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091420Re-query CCDS DB by Protein ID:ENSMUSP00000088982
Original member NCBI NM_028317.3 NP_082593.2 Updated not alive Link to Nucleotide Sequence:NM_028317.3Link to Protein Sequence:NP_082593.2Re-query CCDS DB by Nucleotide ID:NM_028317Re-query CCDS DB by Protein ID:NP_082593
Current member NCBI NM_028317.4 NP_082593.2 Accepted alive Link to Nucleotide Sequence:NM_028317.4Link to Protein Sequence:NP_082593.2Re-query CCDS DB by Nucleotide ID:NM_028317Re-query CCDS DB by Protein ID:NP_082593Link to BLAST:NP_082593.2

Chromosomal Locations for CCDS 57154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 18045610 18048339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2730 nt):
ATGGGAGACCTGAAGTCAGGTTTCGAAGAGGTGGATGGCGTGAGGCTCGGCTACCTCATCATTAAAGGGA
AGCAAATGTTTGCTCTCTCCCAAGTCTTCACAGATCTGCTGAAAAACATCCCGAGGACGACCGTGCACAA
GCGCATGGATCATCTGAAAGTGAAAAAGCACCACTGCGATCTGGAGGAGTTGCGGAAACTCAAAGCAATC
AACAGTATCGCCTTCCACGCGGCCAAATGCACGCTCATCTCCCGGGAAGACGTAGAAGCGCTCTACACAT
CCTGCAAAACCGAGCGTGTGCTCAAGACCAAGCGAAGGAGAGTCGGTCGGGCCCTGGCCACAAAGGCGCC
GCCGCCAGAGCGCGCCGCCGCCGCCAGCCCCCGCCCGGCTTTTTGGAAGGACAAGCACCAACTTTGGCGG
GGCCTGAGCGGAGCCGCGCGGCCCCTGCCAATCAGCGCGCAGTCCCAGCGTCCGGGCGCCGCCGCCGCGC
GCCCCGCCGCCCATCTACCTCAGATTTTTAGCAAATACCCGGGCTCCCACTACCCGGAGATCGTTCGCTC
GCCTTGCAAATCCTCTTTAAACTATGAAACTGCCCAGCTCCAGGGAAACTACGTCGCCTTCCACTCGGAC
CCCGCTTATTTTCGGAGCCTGCTGTGCAGCAAGCACCCGGCTGCAGCCGCCGCCGCCGCCGCCGCCGCTG
CTGCTGCCGCCGCCGCCGCCGCCTACTACCAGACTGCCGGGCCTCAGCCCAAGGCGGCGACCGGCGCGGG
AGGCCCAGTGAGCCTGACTTACCGCTGCAAGCGCAAGCGCGGGGGCGCCAAGAACTGCCTGCTCCCGCCT
CACGCCGGAGCCCGGCGCCTGCTGCTGCTGCCCAGATCCTACAAAGCCAAGGCGGCGGCGGCGGCAGCAG
CGGCGGCTGCTGCTGCGGCGGCGGCGGCCGGGGCCACTTGCTTGGAGAGGTTTCATCTGGTCAACAGCTT
CTGCCCGCCTCCCCACCACCACCATCACCATCACCACCATCATCATCACCATCACCACCGAGCCCAGCAG
CCAACGCCGAGTCACCACCCCTCTCATCACCACCGGCCGCAACCCCATCTAGGAAGCTTTCCCGAGAGTT
GTAGCAGCGACTCCGAGTCCAGCTCCTACTCCGACCATGCAGCCAATGACTCGGATTTTGGCTCCAGTTT
GTCCAGCTCCAGCAACTCGGTGTCCTCAGAGGAAGAGGAGGAGGAAGGAGAGGAGGAGGAGGAAGAGGAG
GAGGAGGAAGAGGGGGGCAGCGGGGCCTCGGATTCCAGTGAAATCAGCTCGGAGGAGGAGGATTCTTCCA
CCGAGTCAGACTCCAGCTCCGGGTCCAGCCAAGTGTCAGTGCAGAGCATCCGTTTCAGGCGCACCAGCTT
CTGCAAGCCTCCCAGCGTGCAGGCGCAGGCCAACTTCTTGTACCATCTGGCCTCCGCCGCCGCTGCAACC
AAACCCGCTGCTTTCGAGGATGCCGGCCGACTTCCCGACCTCAAGAGTAGTGTCAAAGCCGAGTCACCAG
AGGAGTGGAGTCTGCAGAGCTGGGCTCCCAAAGGGACTCCGGTGTACTGCCCGGCCAGCTTGGGGAGTTG
TTTCCCAGAGATAAGAAACGATAGGGTATCTGAGATTACATTCCCACACTCTGAAATATCCAGTACTGTA
AAGAGAACTGACCTGACAATTAACTGCCATGCAGAGGGGGCCTCTTCACCTAGCCCAAAGACAAACAATG
TATTTCCACAACAAAGAATACTCCGAGAGGCTAGGAAATGCCTACAAGCAACTCCTACTACACACTGTGC
AGAAAACAGCACAATAGCTGCTAGGTTCTTAAATAATGATTCGTGTGGAACAACAGCAAATTCAGGAAAA
GATTCCAAAATCCCTCATTGTCCTGAATTTGCTACGGATTTACCCTCTCTTCAAAGTGATCCCAGAGTGG
ATACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACTAAAGCTGAGAGTCTCTGCACTGGTACAGGTGA
CAAGACATTGCCATTTCTGCACAATATTAAAATCAAAGTAGAAGACAGTAGTGCTAATGAAGAATATGAA
CCTGAGCTTATTACAAATAAGCTAAAGTGGGAGTGCAATGATGCCGAGGGTGAGTTTTACAATATGACTG
AGAAGAAGGAGGAGGACGCCTTGGTACCCACAGCCAAGGAAGGTTTTGCATGCCCTGAGAAAGAAACGCC
TTCCTTAAATCCACTGGCTCAGAGTCAGGGCCTCTCATGCACTTTAGGATCTCCAAAACCTGAGGATGGG
GAATATAAATTTGGTGCCAGGGTGAGAAAAAATTACCGGACACTAGTACTGGGCAAACGACCAGTCCTTC
AGACACCTCCAGTCAAACCAAATTTGAAATCAGCTAGAAGCCCTCGTCCTACAGGTAAAACTGAGACACA
TGAAGGAACACTGGATGACTTTACAGTTTTAAACAGACGCAAAAAGGTAGCCAGCAATGTAGCATCAGCA
GTGAAAAGGCCATTTAATTTCATGGCAAATTTTCCTTGTCCACCTTCACTCATTATTGGGAAGGATGGGG
ATTTGTGGCCAGCGTATTCCTTAAACACCACTAAGGATTCCCAACCTCCTCACAAGGCCCATCCTATATG
GAAATGGCAGCTGGGCGGTTCTGCAATACCTCTTCCACCTAGTCACAAATTCAGGAAATTTAATTCATAA

Translation (909 aa):
MGDLKSGFEEVDGVRLGYLIIKGKQMFALSQVFTDLLKNIPRTTVHKRMDHLKVKKHHCDLEELRKLKAI
NSIAFHAAKCTLISREDVEALYTSCKTERVLKTKRRRVGRALATKAPPPERAAAASPRPAFWKDKHQLWR
GLSGAARPLPISAQSQRPGAAAARPAAHLPQIFSKYPGSHYPEIVRSPCKSSLNYETAQLQGNYVAFHSD
PAYFRSLLCSKHPAAAAAAAAAAAAAAAAAAYYQTAGPQPKAATGAGGPVSLTYRCKRKRGGAKNCLLPP
HAGARRLLLLPRSYKAKAAAAAAAAAAAAAAAAGATCLERFHLVNSFCPPPHHHHHHHHHHHHHHHRAQQ
PTPSHHPSHHHRPQPHLGSFPESCSSDSESSSYSDHAANDSDFGSSLSSSSNSVSSEEEEEEGEEEEEEE
EEEEGGSGASDSSEISSEEEDSSTESDSSSGSSQVSVQSIRFRRTSFCKPPSVQAQANFLYHLASAAAAT
KPAAFEDAGRLPDLKSSVKAESPEEWSLQSWAPKGTPVYCPASLGSCFPEIRNDRVSEITFPHSEISSTV
KRTDLTINCHAEGASSPSPKTNNVFPQQRILREARKCLQATPTTHCAENSTIAARFLNNDSCGTTANSGK
DSKIPHCPEFATDLPSLQSDPRVDTATAAAAAAAATKAESLCTGTGDKTLPFLHNIKIKVEDSSANEEYE
PELITNKLKWECNDAEGEFYNMTEKKEEDALVPTAKEGFACPEKETPSLNPLAQSQGLSCTLGSPKPEDG
EYKFGARVRKNYRTLVLGKRPVLQTPPVKPNLKSARSPRPTGKTETHEGTLDDFTVLNRRKKVASNVASA
VKRPFNFMANFPCPPSLIIGKDGDLWPAYSLNTTKDSQPPHKAHPIWKWQLGGSAIPLPPSHKFRKFNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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