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Report for CCDS39874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39874.1 Public Mus musculus 7 Zfp74 23 108 98 CCDS HistoryNCBI Gene:72723Re-query CCDS DB by CCDS ID:39874.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032797.8 ENSMUSP00000032797.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032797.8Link to Ensembl Protein Viewer:ENSMUSP00000032797.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032797Re-query CCDS DB by Protein ID:ENSMUSP00000032797
Original member Current member EBI ENSMUST00000108205.8 ENSMUSP00000103840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108205.8Link to Ensembl Protein Viewer:ENSMUSP00000103840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108205Re-query CCDS DB by Protein ID:ENSMUSP00000103840
Original member Current member NCBI NM_178384.4 NP_848471.2 Accepted alive Link to Nucleotide Sequence:NM_178384.4Link to Protein Sequence:NP_848471.2Re-query CCDS DB by Nucleotide ID:NM_178384Re-query CCDS DB by Protein ID:NP_848471Link to BLAST:NP_848471.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848471.2 679 Q80W31 679 100% 0 0

Chromosomal Locations for CCDS 39874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29934242 29936043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29937600 29937695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29937942 29938068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29943491 29943505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGACCGAGTCTGAGGGACTAGTGACGTTCAAAGACGTGGCCATTGATTTTACCCAAGAAGAATGGAAGC
AACTGGATCCTACTCAGCGGAACCTATATAGGAATGTGATGCTAGAAAACTACAACAACTTAATCACAGT
AGGCCCGCCACTCACCAAACCTGAAGTGATTTTCAAGTTGGAGCAAGAGGAAGAGCCTTGTGTGGTGGAG
AGAGAAGTGCTGTGGAGACCCTGTCCAGGGGAGATTTTGGGAATTGACGAGCACCAGAAAATCCAGGACG
GACAAGTTTTCGAGGGAATAGTGGTGACGAGTGAAGCCAGCGAATGTCCGGAGGAATTTGCAAGTACGTT
TTTCCCAAACGCAGACTCCATTCCTTCCATGCACAGTCTCTTTGAATGTGACGGTGTTGGAGAGTGTTTA
GAGCCCAATTTTGGTGATGATGATGTACAATACCCGTTGCCAGAGGAACAGTTTGAATATGACGATGCTA
TGCAGCCATTTCACACCAGCTCGCCCCATTTTGTGCTGACCCCCTTTAAGTGCAACCATTGTGGAAAAGG
CTTTAGTCAGACCCTGGACCTCATCAGACACCTGAGAGTTCACACAGGGGGGAAGCTCTATGAATGCCAC
CAGTGTGGGAAAGGCTTTAGCCACAAGGAGAAGCTGATCAACCATCATAAGCTCCATAGCAGGGAGCAGT
GTTACGAGTGTAGCGAGTGCGGGAAGACTTTCATCAAGATGTCAAATCTCATTAGACATCAAAGGATCCA
CACTGGGGAGAAGCCGTATGTGTGCCAGGAATGTGGGAAATCCTTCGGCCAGAAGTCCAATCTCATTGAT
CACGAAAAAATTCACACTGGAGAGAAGCCTTACAAATGTAACGAATGTGGAAAATCCTTCAGCCAGAAAC
AAAGCCTTGTCGCACATCAGAAAGTTCACACTGGGGAGAAGCCTTACGCGTGCAACGAGTGTGGGAAAGC
CTTCCCTCGCGTGGCTTCCCTTGCTCTGCATATGAGGGGCCACACAGGGGAGAAGCCATACAAGTGTGAT
AAGTGTGGGAAAGCCTTCTCTCAGTTTTCCATGCTCATCATACACGTGAGGGTCCACACCGGGGAGAAGC
CTTATGAGTGTGGTGAGTGTGGCAAGGCCTTCTCTCAGAGCTCGGCACTGACAGTACACATTAGAAGCCA
CACGGGCGAGAAACCCTACGAATGTAAGGAATGCAGAAAATCCTTCAGTCATAAGAAAAACTTCATCACC
CACCAGAAAATCCATACTCGAGAGAAACCTTACGGATGCAATGAGTGTGGGAAAGCTTTTATCCAGATGT
CAAACCTTGTCAGGCACCAGAGGATCCACACGGGAGAAAAACCTTATCTATGTAAGGAGTGTGGCAAAGC
CTTCAGCCAGAAGTCAAATCTCATTGCTCATGAAAAAATTCACTCTGGAGAGAAACCCTACGAGTGTAAT
GAGTGTGGGAAAGCCTTCAGCCAGAAGCAAAACTTCATCACCCATCAGAAAGTTCATACGGGAGAGAAAC
CTTACGATTGTAATAAATGTGGGAAAGCCTTTTCCCAGATCGCTTCCCTCACGCTTCATCTGCGAAGTCA
CACGGGAGAAAAGCCTTACGAGTGTGAGAAGTGTGGGAAGGCCTTCTCCCAGTGCTCACTACTCAACTTA
CACATGAGAAGCCACACAGGGGAGAAGCCGTACGTGTGTAACGAGTGCGGAAAAGCCTTCTCTCAAAGAA
CGTCCCTCATCGTGCATATGAGAGGCCATACCGGCGAGAAGCCCTATGAATGTAACAAGTGTGGGAAAGC
TTTCTCCCAGAGTTCCTCCCTCACTATCCACATCCGGGGTCACACGGGCGAGAAGCCCTTCGACTGCAGC
AACTGTGGGAAAGCCTTCTCTCAGATCTCTTCTCTTACGCTTCACATGAGGAAACACACAGGCGAGAAGC
CCTATGTCTGTATTGAGTGTGGAAAAGCTTTCAGCCAAAAGTCACACCTTGTCAGACACCAGAGAATCCA
CACTCACTAG

Translation (679 aa):
MTESEGLVTFKDVAIDFTQEEWKQLDPTQRNLYRNVMLENYNNLITVGPPLTKPEVIFKLEQEEEPCVVE
REVLWRPCPGEILGIDEHQKIQDGQVFEGIVVTSEASECPEEFASTFFPNADSIPSMHSLFECDGVGECL
EPNFGDDDVQYPLPEEQFEYDDAMQPFHTSSPHFVLTPFKCNHCGKGFSQTLDLIRHLRVHTGGKLYECH
QCGKGFSHKEKLINHHKLHSREQCYECSECGKTFIKMSNLIRHQRIHTGEKPYVCQECGKSFGQKSNLID
HEKIHTGEKPYKCNECGKSFSQKQSLVAHQKVHTGEKPYACNECGKAFPRVASLALHMRGHTGEKPYKCD
KCGKAFSQFSMLIIHVRVHTGEKPYECGECGKAFSQSSALTVHIRSHTGEKPYECKECRKSFSHKKNFIT
HQKIHTREKPYGCNECGKAFIQMSNLVRHQRIHTGEKPYLCKECGKAFSQKSNLIAHEKIHSGEKPYECN
ECGKAFSQKQNFITHQKVHTGEKPYDCNKCGKAFSQIASLTLHLRSHTGEKPYECEKCGKAFSQCSLLNL
HMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAFSQSSSLTIHIRGHTGEKPFDCS
NCGKAFSQISSLTLHMRKHTGEKPYVCIECGKAFSQKSHLVRHQRIHTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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