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Report for CCDS14986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14986.1 Public Mus musculus 1 Fam117b 23 108 98 CCDS HistoryNCBI Gene:72750Re-query CCDS DB by CCDS ID:14986.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036540.11 ENSMUSP00000041671.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036540.11Link to Ensembl Protein Viewer:ENSMUSP00000041671.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036540Re-query CCDS DB by Protein ID:ENSMUSP00000041671
Original member Current member NCBI NM_001037725.3 NP_001032814.1 Accepted alive Link to Nucleotide Sequence:NM_001037725.3Link to Protein Sequence:NP_001032814.1Re-query CCDS DB by Nucleotide ID:NM_001037725Re-query CCDS DB by Protein ID:NP_001032814Link to BLAST:NP_001032814.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032814.1 584 Q3U3E2 584 100% 0 0

Chromosomal Locations for CCDS 14986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59913164 59913752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59949053 59949204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59952935 59953024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59958322 59958435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59968954 59969097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59970486 59970711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59974883 59975003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59981409 59981727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGTCCCAGCGGGTGAGGCGCAATGGGTCTCCCACGCCCGCCGGCGCCCTCGCGGGTGGCGCGGTCGGCC
CGCCCGGGGGCCCTGGGAGCCGCCTGCAGCCCATGAGGGCGACGGTGCCGTTCCAGCTGAAGCAGCAGCA
GCAACATGGCAGCCCCACGCGGGGCGGCGGCGGCGGCGGCAACAACGGAGGCAACGGAGGCGCCTCAGGC
CCCTCGGGCGGCGGCGGCAGTGGCGGCCCGCGCACCGCCTCACGCAGCACCAGCCCCACGCGCGGCGGCG
GCGGCAGCGCGGCGGCGCGTACCAGCCCCACGGTGGCCACGCAGACGGGAGCGTCCGTGACGTCCACGCG
CGGTACCAGCCCCACGCGCGGCACGGCGCCTGGGGCCCGAAGCAGTCCTCCGCGCCCGCAGCCGCCACCG
CCCCTGCTGGGCACCGTGTCGTCGCCCAGTTCGTCGCCCACCCACCTGTGGCCGAGCGAGGTGATTGCGG
CCCCACCCTCCGCCCGCGTCCGCCACCGGAGGAGGTCCCCAGAGCAGGGCCGACCCTCGGCGGAGAAGAG
GAGCCCCAGCGCCCCGGTGTGCAAAGCAGGTGACAAAACACACCCGCCTTCCTCAAGCTCCTCCAGCATT
ATCCGACGCACATCTTCCCTGGATACCCTCGCAGCTCCATACCTTGCTGGGCACTGGCCCCGAGACATTC
GTGGGCAAGCCGCACCCTGCATGAGGGACAAGGCCACACAGACCGAGAGTGCATGGGCTGAAGAATATGA
AAAGAAGAAAGGGTCTCATAAGCGCTCATCATCCTGGGGCAGCACAGAACAGCTTAAAGAGATTGCAAAA
TTACGCCAGCAACTGCAGAGAAGCAAACACAGCAGTCGTCACCACCGAGATAAAGAAAGGCAGTCTCCAT
TCCATGGCAACCATGCAGCTATTAACCAGAGCCAGGCTCCTGCTCCAAAGAGCACGCTCGTTCCCGCTGG
CCCCATCACCAAGTCGTCTGGTTCTCGGTTCCGGAACAGTGTGGAAGGGCTGAATCAGGAGATTGAGATC
ATAATTAAAGAGACGGGGGAGAAGGAAGAACAGCTGATTCCACAAGATATTCCAGATGGTCATCGTGCGC
CTCCGCCCCTCGCACAGAGAAGCAGCAGCACACGAAGCATTGACACACAGACCCCTGGGGGTGCAGACAA
GGGAAGCAACAACAGCAGCCGCTCTCAGTCTGTGTCCCCAACATCCTTCCTCACCATCTCTAATGAAGGC
AGTGAGGAGAGCCCCTGTTCAGCTGATGATCTGCTTGCGGATCCCAGAGATAAAGAGAATGGAAACAATT
CTCCTTTGCCAAAATATGCAACCTCACCAAAACCTAATAACAGTTACATGTTTAAAAGGGAACCTCCAGA
GGGCTGTGAAAGGGTCAAAGTCTTTGAGGAATGCTCGCCAAAACAACTTCATGAGATTCCAGCCTTTTAC
TGTCCTGACAAAAACAAGGTGAATTTCATTCCTAAAAGTGGCTCTGCTTTCTGCCTCGTGAGTATCCTCA
AACCACTTCTCCCTACACCAGATCTTACTCTCAAGGGCTCTGGTCACAGCCTGACCGTCACCACTGGCAT
GACCACCACTTTGCTCCAGCCCATCTCTATGGCCTCCCTGTCTACAAACACAGAGCAAGAGCGGGTATCT
CGAGGAACCAGTACAGTCCTGCCATCCGCCTCCCTCCATGCACCACCAGAACCCATTGAGGAAGCTGAAG
GATAG

Translation (584 aa):
MSQRVRRNGSPTPAGALAGGAVGPPGGPGSRLQPMRATVPFQLKQQQQHGSPTRGGGGGGNNGGNGGASG
PSGGGGSGGPRTASRSTSPTRGGGGSAAARTSPTVATQTGASVTSTRGTSPTRGTAPGARSSPPRPQPPP
PLLGTVSSPSSSPTHLWPSEVIAAPPSARVRHRRRSPEQGRPSAEKRSPSAPVCKAGDKTHPPSSSSSSI
IRRTSSLDTLAAPYLAGHWPRDIRGQAAPCMRDKATQTESAWAEEYEKKKGSHKRSSSWGSTEQLKEIAK
LRQQLQRSKHSSRHHRDKERQSPFHGNHAAINQSQAPAPKSTLVPAGPITKSSGSRFRNSVEGLNQEIEI
IIKETGEKEEQLIPQDIPDGHRAPPPLAQRSSSTRSIDTQTPGGADKGSNNSSRSQSVSPTSFLTISNEG
SEESPCSADDLLADPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFEECSPKQLHEIPAFY
CPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLTVTTGMTTTLLQPISMASLSTNTEQERVS
RGTSTVLPSASLHAPPEPIEEAEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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