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Report for CCDS46409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46409.1 Public Homo sapiens 2 POTEF 24 110 108 CCDS HistoryNCBI Gene:728378Re-query CCDS DB by CCDS ID:46409.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46409.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409914.7 ENSP00000386786.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409914.7Link to Ensembl Protein Viewer:ENSP00000386786.2Re-query CCDS DB by Nucleotide ID:ENST00000409914Re-query CCDS DB by Protein ID:ENSP00000386786
Original member Current member NCBI NM_001099771.2 NP_001093241.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099771.2Link to Protein Sequence:NP_001093241.1Re-query CCDS DB by Nucleotide ID:NM_001099771Re-query CCDS DB by Protein ID:NP_001093241Link to BLAST:NP_001093241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093241.1 1075 A5A3E0 1075 100% 0 0

Chromosomal Locations for CCDS 46409.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130074244 130075572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130077081 130077201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130085814 130085995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130086343 130086387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130088067 130088137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130093438 130093508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130099470 130099636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130100676 130100720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130102110 130102180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130108009 130108079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130110543 130110680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130111995 130112101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130114881 130115054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130115214 130115328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130119995 130120515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3228 nt):
ATGGTGGTTGAGGTTGATTCCATGCCGGCTGCCTCTTCTGTGAAGAAGCCATTTGGTCTCAGGAGCAAGA
TGGGCAAGTGGTGCTGCCGTTGCTTCCCCTGCTGCAGGGAGAGCGGCAAGAGCAACGTGGGCACTTCTGG
AGACCACGACGACTCTGCTATGAAGACACTCAGGAGCAAGATGGGCAAGTGGTGCCGCCACTGCTTCCCC
TGCTGCAGGGGGAGTGGCAAGAGCAACGTGGGCGCTTCTGGAGACCACGACGACTCTGCTATGAAGACAC
TCAGGAACAAGATGGGCAAGTGGTGCTGCCACTGCTTCCCCTGCTGCAGGGGGAGCAGCAAGAGCAAGGT
GGGCGCTTGGGGAGACTACGATGACAGTGCCTTCATGGAGCCCAGGTACCACGTCCGTGGAGAAGATCTG
GACAAGCTCCACAGAGCTGCCTGGTGGGGTAAAGTCCCCAGAAAGGATCTCATCGTCATGCTCAGGGACA
CTGACGTGAACAAGCAGGACAAGCAAAAGAGGACTGCTCTACATCTGGCCTCTGCCAATGGGAATTCAGA
AGTAGTAAAACTCCTGCTGGACAGACGATGTCAACTTAATGTCCTTGACAACAAAAAGAGGACAGCTCTG
ATAAAGGCCGTACAATGCCAGGAAGATGAATGTGCGTTAATGTTGCTGGAACATGGCACTGATCCAAATA
TTCCAGATGAGTATGGAAATACCACTCTGCACTACGCTATCTATAATGAAGATAAATTAATGGCCAAAGC
ACTGCTCTTATATGGTGCTGATATCGAATCAAAAAACAAGCATGGCCTCACACCACTGTTACTTGGTGTA
CATGAGCAAAAACAGCAAGTCGTGAAATTTTTAATTAAGAAAAAAGCGAATTTAAATGCACTGGATAGAT
ATGGAAGAACTGCTCTCATACTTGCTGTATGTTGTGGATCAGCAAGTATAGTCAGCCTTCTACTTGAGCA
AAATATTGATGTATCTTCTCAAGATCTATCTGGACAGACGGCCAGAGAGTATGCTGTTTCTAGTCATCAT
CATGTAATTTGCCAGTTACTTTCTGACTACAAAGAAAAACAGATGCTAAAAATCTCTTCTGAAAACAGCA
ATCCAGAACAAGACTTAAAGCTGACATCAGAGGAAGAGTCACAAAGGTTCAAAGGCAGTGAAAATAGCCA
GCCAGAGAAAATGTCTCAAGAACCAGAAATAAATAAGGATGGTGATAGAGAGGTTGAAGAAGAAATGAAG
AAGCATGAAAGTAATAATGTGGGATTACTAGAAAACCTGACTAATGGTGTCACTGCTGGCAATGGTGATA
ATGGATTAATTCCTCAAAGGAAGAGCAGAACACCTGAAAATCAGCAATTTCCTGACAACGAAAGTGAAGA
GTATCACAGAATTTGTGAATTACTTTCTGACTACAAAGAAAAGCAGATGCCAAAATACTCTTCTGAAAAC
AGCAACCCAGAACAAGACTTAAAGCTGACATCAGAGGAAGAGTCACAAAGGCTTAAAGGCAGTGAAAATG
GCCAGCCAGAGAAAAGATCTCAAGAACCAGAAATAAATAAGGATGGTGATAGAGAGCTAGAAAATTTTAT
GGCTATCGAAGAAATGAAGAAGCACAGAAGTACTCATGTCGGATTCCCAGAAAACCTGACTAATGGTGCC
ACTGCTGGCAATGGTGATGATGGATTAATTCCTCCAAGGAAGAGCAGAACACCTGAAAGCCAGCAATTTC
CTGACACTGAGAATGAAGAGTATCACAGTGACGAACAAAATGATACTCAGAAGCAATTTTGTGAAGAACA
GAACACTGGAATATTACACGATGAGATTCTGATTCATGAAGAAAAGCAGATAGAAGTGGTTGAAAAAATG
AATTCTGAGCTTTCTCTTAGTTGTAAGAAAGAAAAAGACATCTTGCATGAAAATAGTACGTTGCGGGAAG
AAATTGCCATGCTAAGACTGGAGCTAGACACAATGAAACATCAGAGCCAGCTAAGAGAAAAGAAATATTT
GGAGGATATTGAAAGTGTGAAAAAAAGGAATGATAATCTTTTAAAGGCTCTACAATTGAATGAGCTCACC
ATGGATGATGATACCGCTGTGCTCGTCATTGACAACGGCTCTGGCATGTGCAAGGCCGGCTTTGCGGGCG
ACGATGCCCCCCGGGCTGTCTTCCCTTCCATCGTGGGGCGCCCCAGGCAGCAGGGCATGATGGGGGGCAT
GCATCAGAAAGAGTCCTATGTGGGCAAGGAGGCCCAGAGCAAAAGAGGCATCCTGACCCTGAAGTACCCC
ATGGAACACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGC
TGCGTGTGGCTCCCGAGGAGCACCCCGTCCTGCTGACCGAGGCCACCCTGAACCCTAAGGCCAACCGCGA
GAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTACGTGGCCATCCAGGCTGTGCTG
TCCCTGTACACCTCTGGCCGTACTACTGGCATCGTGATGGACTCTGGTGACGGGGTCACCCACACTGTGC
CCATCTATGAGGGGAATGCCCTCCCCCATGCCACCCTGCGCCTAGACCTGGCTGGGCGGGAACTGCCTGA
CTACCTCATGAAGATCCTCACCGAGCATGGCTATAGGTTCACCACCATGGCCGAGCGGGAAATCGTGCGT
GACATCAAAGAGAAGCTGTGCTATGTTGCCCTGGACTTCGAGCAGGAGATGGCCACGGTGGCCTCCAGCT
CCTCCCTAGAGAAGAGCTACGAGCTGCCCGATGGCCAGGTCATCACCATCGGCAACGAGCGGTTCCGCTG
CCCCGAGGCGCTCTTCCAGCCTTGCTTCCTGGGCATGGAATCCTGTGGCATCCATGAAACTACCTTCAAC
TCCATCATGAAGTCTGATGTGGACATCCGCAAAGACCTGTACACCAACACAGTGCTGTCTGGCGGCACCA
CCATGTACCCTGGCATGGCCCACAGAATGCAGAAGGAGATCGCTGCCCTGGCGCCTAGCATGATGAAGAT
CAGGATCATTGCTCCTCCCAAGCGCAAGTACTCCGTGTGGGTCGGTGGCTCCATCCTGGCCTCGCTGTCC
ACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAGTCAGGCCCCTCCATTGTCCACCGCAAAT
GCTTGTAG

Translation (1075 aa):
MVVEVDSMPAASSVKKPFGLRSKMGKWCCRCFPCCRESGKSNVGTSGDHDDSAMKTLRSKMGKWCRHCFP
CCRGSGKSNVGASGDHDDSAMKTLRNKMGKWCCHCFPCCRGSSKSKVGAWGDYDDSAFMEPRYHVRGEDL
DKLHRAAWWGKVPRKDLIVMLRDTDVNKQDKQKRTALHLASANGNSEVVKLLLDRRCQLNVLDNKKRTAL
IKAVQCQEDECALMLLEHGTDPNIPDEYGNTTLHYAIYNEDKLMAKALLLYGADIESKNKHGLTPLLLGV
HEQKQQVVKFLIKKKANLNALDRYGRTALILAVCCGSASIVSLLLEQNIDVSSQDLSGQTAREYAVSSHH
HVICQLLSDYKEKQMLKISSENSNPEQDLKLTSEEESQRFKGSENSQPEKMSQEPEINKDGDREVEEEMK
KHESNNVGLLENLTNGVTAGNGDNGLIPQRKSRTPENQQFPDNESEEYHRICELLSDYKEKQMPKYSSEN
SNPEQDLKLTSEEESQRLKGSENGQPEKRSQEPEINKDGDRELENFMAIEEMKKHRSTHVGFPENLTNGA
TAGNGDDGLIPPRKSRTPESQQFPDTENEEYHSDEQNDTQKQFCEEQNTGILHDEILIHEEKQIEVVEKM
NSELSLSCKKEKDILHENSTLREEIAMLRLELDTMKHQSQLREKKYLEDIESVKKRNDNLLKALQLNELT
MDDDTAVLVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRQQGMMGGMHQKESYVGKEAQSKRGILTLKYP
MEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEATLNPKANREKMTQIMFETFNTPAMYVAIQAVL
SLYTSGRTTGIVMDSGDGVTHTVPIYEGNALPHATLRLDLAGRELPDYLMKILTEHGYRFTTMAEREIVR
DIKEKLCYVALDFEQEMATVASSSSLEKSYELPDGQVITIGNERFRCPEALFQPCFLGMESCGIHETTFN
SIMKSDVDIRKDLYTNTVLSGGTTMYPGMAHRMQKEIAALAPSMMKIRIIAPPKRKYSVWVGGSILASLS
TFQQMWISKQEYDESGPSIVHRKCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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