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Report for CCDS23995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23995.1 Public Mus musculus 10 Cfd 23 108 98 CCDS HistoryNCBI Gene:11537Re-query CCDS DB by CCDS ID:23995.1Re-query CCDS DB by GeneID:11537See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061653.8 ENSMUSP00000056836.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061653.8Link to Ensembl Protein Viewer:ENSMUSP00000056836.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061653Re-query CCDS DB by Protein ID:ENSMUSP00000056836
Original member Current member NCBI NM_013459.4 NP_038487.1 Accepted alive Link to Nucleotide Sequence:NM_013459.4Link to Protein Sequence:NP_038487.1Re-query CCDS DB by Nucleotide ID:NM_013459Re-query CCDS DB by Protein ID:NP_038487Link to BLAST:NP_038487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038487.1 259 P03953-1 259 100% 0 0

Chromosomal Locations for CCDS 23995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79890926 79890980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79891456 79891612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79891703 79891850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79891992 79892249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79892425 79892586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGCACAGCTCCGTGTACTTCGTGGCTCTGGTGATCCTGGGAGCGGCTGTATGTGCAGCACAGCCCCGAG
GCCGGATTCTGGGTGGCCAGGAGGCCGCAGCCCATGCTCGGCCCTACATGGCTTCCGTGCAAGTGAACGG
CACACACGTGTGCGGTGGCACCCTGCTGGACGAGCAGTGGGTGCTCAGTGCTGCACACTGCATGGATGGA
GTGACGGATGACGACTCTGTGCAGGTGCTCCTGGGTGCCCACTCCCTGTCCGCCCCTGAACCCTACAAGC
GATGGTATGATGTGCAGAGTGTAGTGCCTCACCCGGGCAGCCGACCTGACAGCCTTGAGGACGACCTCAT
TCTTTTTAAGCTATCCCAGAATGCCTCGTTGGGTCCCCACGTGAGACCCCTACCCTTGCAATACGAGGAC
AAAGAAGTGGAACCCGGCACGCTCTGCGACGTGGCTGGTTGGGGTGTGGTCACCCATGCAGGACGCAGGC
CTGATGTCCTGCATCAACTCAGAGTGTCAATCATGAACCGGACAACCTGCAATCTGCGCACGTACCATGA
CGGGGTAGTCACCATTAACATGATGTGTGCAGAGAGCAACCGCAGGGACACTTGCAGGGGAGACTCCGGC
AGCCCTCTAGTGTGCGGGGATGCAGTCGAAGGTGTGGTTACGTGGGGCTCTCGCGTCTGTGGCAATGGCA
AAAAGCCGGGCGTCTATACCCGAGTGTCATCCTACCGGATGTGGATCGAAAACATCACAAATGGTAACAT
GACATCCTGA

Translation (259 aa):
MHSSVYFVALVILGAAVCAAQPRGRILGGQEAAAHARPYMASVQVNGTHVCGGTLLDEQWVLSAAHCMDG
VTDDDSVQVLLGAHSLSAPEPYKRWYDVQSVVPHPGSRPDSLEDDLILFKLSQNASLGPHVRPLPLQYED
KEVEPGTLCDVAGWGVVTHAGRRPDVLHQLRVSIMNRTTCNLRTYHDGVVTINMMCAESNRRDTCRGDSG
SPLVCGDAVEGVVTWGSRVCGNGKKPGVYTRVSSYRMWIENITNGNMTS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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