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Report for CCDS18647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18647.1 Public Mus musculus 4 Trappc3 23 108 98 CCDS HistoryNCBI Gene:27096Re-query CCDS DB by CCDS ID:18647.1Re-query CCDS DB by GeneID:27096See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030660.8 ENSMUSP00000030660.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030660.8Link to Ensembl Protein Viewer:ENSMUSP00000030660.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030660Re-query CCDS DB by Protein ID:ENSMUSP00000030660
Original member Current member NCBI NM_013718.2 NP_038746.1 Accepted alive Link to Nucleotide Sequence:NM_013718.2Link to Protein Sequence:NP_038746.1Re-query CCDS DB by Nucleotide ID:NM_013718Re-query CCDS DB by Protein ID:NP_038746Link to BLAST:NP_038746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038746.1 180 O55013 180 100% 0 0

Chromosomal Locations for CCDS 18647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126262496 126262537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126272678 126272775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126272975 126273074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126273890 126274072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126275142 126275261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGTCGAGGCAGGCGAACCGTGGCACGGAGAGCAAGAAAATGAGTTCTGAGCTGTTCACGCTGACCTATG
GAGCGCTTGTCACCCAGCTGTGCAAGGACTATGAAAACGACGAAGACGTGAACAAGCAGCTGGACAGAAT
GGGCTACAACATTGGAGTCCGACTGATTGAAGATTTTTTGGCACGGTCAAATGTTGGAAGATGTCATGAC
TTTCGGGAAACTGCAGATGTTATTGCTAAGGTGGCGTTCAAGATGTACCTGGGCATCACTCCAAGCATCA
CCAACTGGAGCCCAGCCGGAGATGAATTCTCCCTCATCCTGGAAAACAACCCTCTGGTGGACTTTGTGGA
GCTTCCCGATAACCACTCGGCCCTCATTTACTCCAACCTCCTGTGTGGGGTGTTGCGGGGAGCCCTGGAG
ATGGTCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACTCTGAAGGGAGATGGCGTGACAGAAATCA
GGATGAGGTTCATCAGGCGGATTGAAGACAACCTCCCAGCTGGAGAAGAGTAA

Translation (180 aa):
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHD
FRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALE
MVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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