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Report for CCDS20811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20811.1 Public Mus musculus 7 2900092C05Rik 23 108 98 CCDS HistoryNCBI Gene:73090Re-query CCDS DB by CCDS ID:20811.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032541.4 ENSMUSP00000032541.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032541.4Link to Ensembl Protein Viewer:ENSMUSP00000032541.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032541Re-query CCDS DB by Protein ID:ENSMUSP00000032541
Original member Current member NCBI NM_028434.3 NP_082710.2 Accepted alive Link to Nucleotide Sequence:NM_028434.3Link to Protein Sequence:NP_082710.2Re-query CCDS DB by Nucleotide ID:NM_028434Re-query CCDS DB by Protein ID:NP_082710Link to BLAST:NP_082710.2

Chromosomal Locations for CCDS 20811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12512579 12512699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12512816 12512908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12515456 12515497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12550484 12550583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12554618 12554775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12556013 12556053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGCACAAGGTTTGGAGTTCTTCTATGTTTTTATTTTGGTTTTTATTGGGATGCCTACTTCATGTCTGCT
TGCCTTATGCAGATGAGCTTTATACTGTTGAGAAAACAACAGACTTATCAGGGAGTAGACAGTTAGAAAC
TTCTAAATCTTCTATGGGACAGCCCAGAGGCTTACTTGCAATACTTCGACCAACAGAAGTAATAATCCCA
GCACCTAGACCAACTGTGAAGCCATCAGAATTCGATACAAATAAAGTAATTCCACGTAGGCCTGGACTTG
TTCATGTAATTTCAGTTTCAAGTATAGCCTTTGTCATTGCCCTGCTATGTGGGCTCATGCTCTCCTACGT
GATATATCGACTGGTAAAAGTTGAGGAAAAACAGCAGCTTGCAATGTTGTATGAAAATATCGAGATTCCA
CTTGTAGATGAGAAAGAGGCCTCTGAAGATGATGGTTATGATGAATCTCAGTTGCATCCAGAGAATGAGG
AGCTGGGAAAATTCATTAGCTCAGTTATTAAAACAAAAAGAATGGAAAACTTAAGAAGAAAATGA

Translation (184 aa):
MHKVWSSSMFLFWFLLGCLLHVCLPYADELYTVEKTTDLSGSRQLETSKSSMGQPRGLLAILRPTEVIIP
APRPTVKPSEFDTNKVIPRRPGLVHVISVSSIAFVIALLCGLMLSYVIYRLVKVEEKQQLAMLYENIEIP
LVDEKEASEDDGYDESQLHPENEELGKFISSVIKTKRMENLRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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