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Report for CCDS35988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35988.1 Public Mus musculus 10 Sppl2b 23 108 98 CCDS HistoryNCBI Gene:73218Re-query CCDS DB by CCDS ID:35988.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35988.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035597.9 ENSMUSP00000036289.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035597.9Link to Ensembl Protein Viewer:ENSMUSP00000036289.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035597Re-query CCDS DB by Protein ID:ENSMUSP00000036289
Original member Current member NCBI NM_175195.3 NP_780404.2 Accepted alive Link to Nucleotide Sequence:NM_175195.3Link to Protein Sequence:NP_780404.2Re-query CCDS DB by Nucleotide ID:NM_175195Re-query CCDS DB by Protein ID:NP_780404Link to BLAST:NP_780404.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780404.2 578 Q3TD49-1 578 100% 0 0

Chromosomal Locations for CCDS 35988.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80855341 80855388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80861346 80861465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80862180 80862362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80862699 80862788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80862955 80863094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80863180 80863319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80863455 80863551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80864038 80864154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80865121 80865202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80865310 80865384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80865455 80865517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80865608 80865707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80866052 80866129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80866500 80866660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80867400 80867642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGCCGCGGCGCGGCTGGCCGCAGCTTTGCTGCTACTCGCGGCCCAGGTGGCCTGTGAGTTCGGCGTGC
TTCGAGTGGTGTCCCAAACCAGTAGGACTCGGAGCAGGGACTACTGCATCCTCTACAACCCACAGTGGGC
CCACTTGCCACATGACCTCAGCAAAGTGTCTCTCCTGAAGCTTCGAGACTTGAGCACCACCCAGCTCTGT
TCCTACCTTGACGTCCCTGCAGAAGACTTCACCAACCAAATCGCACTGGTGGCCCGGGGCAACTGTACCT
TCTATGAGAAAGTGCGGCTGGCCCAGGGCAGTGGGGCTCACGGGCTGCTGATAGTCAGCAAGGAGAAGCT
GGTCCCTCCAGGAGGCAACAAGACACAGTATGAGGAGATAAGCATCCCTGTGGCCCTGCTGAGCCACAGA
GACCTTCAAGACATCTTCAGGCGCTTTGGCCGTGAGGTAATGGTGGCACTGTATGCTCCGAGCGAGCCAG
TGATGGACTACAACATGGTCATCATCTTTGTCATGGCCGTGGGCACCGTCGCCATCGGTGGCTACTGGGC
TGGCAGCCATGATGTGAAGAAGTACATGAAGCATAAGCGAGACGATGGTCCTGAGAAACAGGAGGATGAG
GCGGTGGACGTGACGCCAGTCATGATCTGCGTGTTTGTTGTAATGTGCTGCTTCATGCTTGTGCTTCTCT
ACTACTTCTATGACCGCCTGGTCTACGTGATCATTGGAATCTTCTGCCTGGCCTCCTCCACCGGTCTCTA
CAGCTGTCTGGCACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCG
TACTTCCACAAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACTGTCTCCGTGGTGT
GGGGTATCTTCCGAAATGAGGACCAGTGGGCATGGGTCCTGCAAGACACCCTGGGCATTGCCTTCTGCCT
GTACATGCTGAAGACCATCCGCCTGCCTACCTTCAAGGCCTGCACGCTGCTGCTGCTGGTGCTCTTCATC
TACGACATCTTCTTTGTCTTCATCACCCCCTTCCTGACCAAGAGTGGCAACAGCATCATGGTGGAGGTGG
CCACCGGGCCCTCGAACTCATCCACCCATGAGAAGCTGCCCATGGTGCTGAAGGTGCCCAGGCTGAACAC
CTCGCCACTCTCCCTGTGTGACCGGCCCTTCTCCCTCCTGGGCTTTGGAGACATCTTGGTGCCAGGGCTG
CTGGTGGCCTACTGTCACAGGTTTGATATCCAGGTGCAGTCCTCCAGAATTTACTTTGTGGCCTGTACCA
TTGCCTATGGCCTGGGCCTCCTGGTGACCTTCGTGGCTCTTGTCCTCATGCAGCGTGGCCAGCCTGCACT
ACTCTACCTGGTCCCTTGCACACTGCTGACCAGCTGCACCGTGGCTCTGTGGCGCCGGGAGCTGGGTGCC
TTCTGGACGGGCAGCGGTTTTGCGAAGGATGCACCTCAGACCCCGTGGGCCGCAACCCAGGGACCTGTGC
CTCCGAAGGCTGTGGGTTCCTCCCTCTCCGAGCAGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTC
CACTGAGGAGGCCGGAGCCGCAGACCCTGCCAAGGATCCTGACAACCCTGTGGCCAGTCCCCTCAGCCCC
TCAAATGGGGATGAGGCTCAGCCTATCCCTGTGGTGAAGCCAGAGACTTCGGCCTAG

Translation (578 aa):
MAAARLAAALLLLAAQVACEFGVLRVVSQTSRTRSRDYCILYNPQWAHLPHDLSKVSLLKLRDLSTTQLC
SYLDVPAEDFTNQIALVARGNCTFYEKVRLAQGSGAHGLLIVSKEKLVPPGGNKTQYEEISIPVALLSHR
DLQDIFRRFGREVMVALYAPSEPVMDYNMVIIFVMAVGTVAIGGYWAGSHDVKKYMKHKRDDGPEKQEDE
AVDVTPVMICVFVVMCCFMLVLLYYFYDRLVYVIIGIFCLASSTGLYSCLAPFVRKLPFCTCRVPDNNLP
YFHKRPQARMLLLALFCVTVSVVWGIFRNEDQWAWVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFI
YDIFFVFITPFLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGL
LVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVLMQRGQPALLYLVPCTLLTSCTVALWRRELGA
FWTGSGFAKDAPQTPWAATQGPVPPKAVGSSLSEQPPSEELAKSPLSTEEAGAADPAKDPDNPVASPLSP
SNGDEAQPIPVVKPETSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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