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Report for CCDS22464.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22464.2 Reviewed, update pending Mus musculus 8 1700067K01Rik 23 108 98 CCDS HistoryNCBI Gene:73453Re-query CCDS DB by CCDS ID:22464.2See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22464.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22464.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172548.1 ENSMUSP00000134671.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172548.1Link to Ensembl Protein Viewer:ENSMUSP00000134671.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172548Re-query CCDS DB by Protein ID:ENSMUSP00000134671
Original member NCBI NM_183097.2 NP_898920.2 Updated not alive Link to Nucleotide Sequence:NM_183097.2Link to Protein Sequence:NP_898920.2Re-query CCDS DB by Nucleotide ID:NM_183097Re-query CCDS DB by Protein ID:NP_898920
Current member NCBI NM_183097.3 NP_898920.3 Pending alive Link to Nucleotide Sequence:NM_183097.3Link to Protein Sequence:NP_898920.3Re-query CCDS DB by Nucleotide ID:NM_183097Re-query CCDS DB by Protein ID:NP_898920Link to BLAST:NP_898920.3

Chromosomal Locations for CCDS 22464.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84001742 84001905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84002861 84003002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84003116 84003216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84003296 84003481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84003925 84004059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84004451 84004625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGATGGAAGCTCCAGCCTCCACGTCCTCCCGGGAGCCACTGGCAGCGGAGCTCGGGCCGGCCCCTGCTC
GCCTCCCGCTGGACTCTATGTTCAGCCCCATCACTGACCAGCTCCGTTACCTGCTCAGGAAGGCGGATGA
CTTTCAAAGCTACTTGCTCTACAGGGACCGAGTACAGAAGGAACAGCTAGCCAAGGCCATGCCCACCTTC
TTAACAATGTGTGAACCATACTTCTTATACCTTGAGGCTGCAGCAAGGAGTGTCCCTCCCATCTATGGAG
CCCTGCAGGAGTTGGTCCGGAAGGGGTTGCTGGAGATCTCCCAGCAGCTAACACTGCGCTTGGAACAGTT
AGTTCTCATGTATGCCTCCTTTGGGTTCGTGGACCTGGAGGAAACCAACCCTTTGAGCATCTCCTGCTTT
TTCTGCGGGAGGTTCTCCATCAGCCCCTCCCACGACGTGTCCATCTTCCGATACTGCACACCAGCTGCCT
ATACTGCCAGTCACTTCCCAAGATACCTCTATAAGAAGATGCGCTGGAACCTGGAAACCACCACAGAGGC
CAGCAGCCAAGGAGCAGACTCCCATGTGGATTACTACTTCTTGTGTTATCGAGATACATGGGAGGATGCA
GGCCAGGGACCAGCCAATTCCTGCCCCCAGATCCAGAAACTCTGGTCCATTGGCCGATGGATGCCCCTAG
GACCAGCAGAGGATGATCTTGACTCGTGGATTTTGTGCCCACAGCCACCCGGGGACTACCAGCAGCTACT
AACCATCGGCTTCGAGGAGCCGTCGCATGTGCTGGCCACCGACCTGCTGGTGCAGATCCTCCTGGGCCAG
GCAGGCCCCGCCCGGCCCCCCAGCGCTGCCGGGCCCGCGGCTTGGGCAGCCCCGGCATCCTGA

Translation (300 aa):
MMEAPASTSSREPLAAELGPAPARLPLDSMFSPITDQLRYLLRKADDFQSYLLYRDRVQKEQLAKAMPTF
LTMCEPYFLYLEAAARSVPPIYGALQELVRKGLLEISQQLTLRLEQLVLMYASFGFVDLEETNPLSISCF
FCGRFSISPSHDVSIFRYCTPAAYTASHFPRYLYKKMRWNLETTTEASSQGADSHVDYYFLCYRDTWEDA
GQGPANSCPQIQKLWSIGRWMPLGPAEDDLDSWILCPQPPGDYQQLLTIGFEEPSHVLATDLLVQILLGQ
AGPARPPSAAGPAAWAAPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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