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Report for CCDS78872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78872.1 Public Mus musculus 10 Zfp433 23 108 98 CCDS HistoryNCBI Gene:73610Re-query CCDS DB by CCDS ID:78872.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200889.3 ENSMUSP00000144123.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200889.3Link to Ensembl Protein Viewer:ENSMUSP00000144123.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200889Re-query CCDS DB by Protein ID:ENSMUSP00000144123
Original member Current member NCBI NM_001243067.1 NP_001229996.1 Accepted alive Link to Nucleotide Sequence:NM_001243067.1Link to Protein Sequence:NP_001229996.1Re-query CCDS DB by Nucleotide ID:NM_001243067Re-query CCDS DB by Protein ID:NP_001229996Link to BLAST:NP_001229996.1

Chromosomal Locations for CCDS 78872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81704898 81704900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81718919 81719045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81719245 81719305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81719857 81721468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGATGCGGTGACCTATGAAGATGTGCATGTGAACTTCTCTCATGAAGAGTGGGCTTTGCTGGATTCTT
CCCAGAAGAGTCTCTACAGAGATGTGATGCTGGAAACCTACTGGAACCTCACTGCTATCGGTTACAAATT
GGAAGACCCCAATGTTGAAGAATACTATCAAAGTTATAGAAGACATAGAAGGTATAACATCTGTCATTGT
GGATACAAGCCTTGTGAGCATAAGGGATATGGAAAGAACCAATATATCTTTGCCTGTAACAATTTTCTTC
AAATATATGATAGAATCCAAACTGAAGAGAAACCGTATGGATGTAGTCAATGCAGTAAAGCCTTTGCAAA
TTTCCGTAGTCTTCGAAAACATGAGAAAAATCATACTAGAGAAAAACCCTATGAGTGTAGTCAGTGCAGT
AAAGCCTTTGTAAGTCGCAGTTCTCTTCAAATACACGAAAGAACGCATACAAGAGAGAAACTCTATGACT
GTAATGAATGTGGAAAAGCCTTTTCAACTCGCAGTCATCTTCAAATACATAAAAGAACTCATACAGGAGA
GAAACCCTATGATTGCAGTGAATGTGGAAAAGCATTTGCACGTAGCAGCGCTCTTCTAATACATAAAAGA
AGTCATACAGGAGAGAAACCCTATGGTTGCAATGAATGTGGGAAAGCATTTGCATGTCGCAGTCATCTTC
AAATACACAAAAGAACTCACACTGGAGAGAAACCTTATGATTGTGATGAATGTGGGAAAGCCTTTGCAAC
TCGCAGGCATCTTCAAATACATGAAAGAACTCACACTGGAGAGAAACCATATGAATGTAATCAATGCGGT
AAAGCCTTTATAGGTCGCAGTCATCTTCAAATACATAAAAGAGTGCATACTGGAGAGAAACCTTATGAGT
GTAATCAATGTGGTAAAGCTTTTGCATATAACAGTGATCTTCATCGACATGAAATAATTCATACTGGAGA
GAAACCCTATGGATGTAATCAATGTGGTAAAGCCTTTGCAAATCGTAGTAGTCTTCGAAATCATGAGGAA
CATCATACTCTTGAGAAACCATATGAATGTACTCTATGTGGTAAAGCCTTTGCATATTGCAGTAATCTTT
ATATACATGAAAGATGTCATACTGGAGAGAAACCGTATGTATGTACTCAGTGTGGTAAAGCCTTTGCACG
TCGCAGTCACCTTCATATACATGAAAGATGTCATACTGGAGAGAAACCGTATGTATGTACTCAGTGTGGT
AAAGCCTTTGCACGTCGCAGTCACCTTCATGTACATGAAAGAATTCATGCTGGAGAGAAACCTTATGAGT
GTAATCAATGTGGAAAAGCTTTTCTACTTCGCAGTAGTCTTCTAATACATGAAAGAACTCATACTGGAGA
GAAACCTTATGTATGTAATCAATGTGGTAAAGCCTTTGCACGTCAGAGTCATCTTCAAATACATGAAAGA
AGTCACACTGGAGAGAAACCTTATGAGTGTAATCAATGCAGTAAGGCCTTTGTATGTCGCAGTAATCTCC
AAATGCATGAAAGAACTCACACTGGAGAGAGACCTTATGAATGTAATCAGTGTGGAAAAGCCTTTTCACG
TCGCAGTCTTCTTCAGAAACATGAAAGAAGTCATAGTGGAGAGAAACCTTATGCGTGTAATCAATGTGGT
AAAGCCTTTGCAAGTCGTAGTAGTCTTCGAAATCATGAAAAACATCATAATATTGAGAAACCTAATGAAT
GTAATCAGTGTGCTAAAGCGTTTACGTCTTTTCCACCATCTTCAAATATATGA

Translation (600 aa):
MDAVTYEDVHVNFSHEEWALLDSSQKSLYRDVMLETYWNLTAIGYKLEDPNVEEYYQSYRRHRRYNICHC
GYKPCEHKGYGKNQYIFACNNFLQIYDRIQTEEKPYGCSQCSKAFANFRSLRKHEKNHTREKPYECSQCS
KAFVSRSSLQIHERTHTREKLYDCNECGKAFSTRSHLQIHKRTHTGEKPYDCSECGKAFARSSALLIHKR
SHTGEKPYGCNECGKAFACRSHLQIHKRTHTGEKPYDCDECGKAFATRRHLQIHERTHTGEKPYECNQCG
KAFIGRSHLQIHKRVHTGEKPYECNQCGKAFAYNSDLHRHEIIHTGEKPYGCNQCGKAFANRSSLRNHEE
HHTLEKPYECTLCGKAFAYCSNLYIHERCHTGEKPYVCTQCGKAFARRSHLHIHERCHTGEKPYVCTQCG
KAFARRSHLHVHERIHAGEKPYECNQCGKAFLLRSSLLIHERTHTGEKPYVCNQCGKAFARQSHLQIHER
SHTGEKPYECNQCSKAFVCRSNLQMHERTHTGERPYECNQCGKAFSRRSLLQKHERSHSGEKPYACNQCG
KAFASRSSLRNHEKHHNIEKPNECNQCAKAFTSFPPSSNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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