NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26527.1 Public Mus musculus 13 Thoc3 23 108 98 CCDS HistoryNCBI Gene:73666Re-query CCDS DB by CCDS ID:26527.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26527.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026990.5 ENSMUSP00000026990.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026990.5Link to Ensembl Protein Viewer:ENSMUSP00000026990.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026990Re-query CCDS DB by Protein ID:ENSMUSP00000026990
Original member Current member NCBI NM_028597.3 NP_082873.2 Accepted alive Link to Nucleotide Sequence:NM_028597.3Link to Protein Sequence:NP_082873.2Re-query CCDS DB by Nucleotide ID:NM_028597Re-query CCDS DB by Protein ID:NP_082873Link to BLAST:NP_082873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082873.2 351 Q8VE80 351 100% 0 0

Chromosomal Locations for CCDS 26527.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54460074 54460237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54463472 54463572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54463682 54463843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54466180 54466384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54467826 54467982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54468541 54468807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCGGCGCCCGCTGCGGTCCTGGGCCCCTCGGCCCTCGGCCAGAGCGGCCCCGGCTCGATGGCGCCCT
GGTGCTCAGTGAGCAGTGGCCCGTCTCGTTACGTGCTCGGGATGCAGGAGCTCTTCCGAGGCCACAGCAA
GACGCGCGAATTCCCGGCGCACAGTGCTAAGGTGCACTCGGTCGCCTGGAGCTGCGATGGCCGTCGCTTG
GCCTCGGGGTCCTTCGACAAGACTGCCAGCGTGTTCTTGCTGGAGAAGGACCGGCTGGTCAAAGAAAACA
ACTACCGGGGCCACGGAGATAGTGTGGACCAGCTTTGTTGGCACCCAAGCAACCCTGACCTCTTTGTCAC
CGCATCTGGAGATAAAACCATTCGCATCTGGGATGTGAGGACTACAAAATGCATCGCCACTGTGAATACG
AAAGGGGAGAACATTAACATCTGTTGGAGTCCCGACGGGCAGACCATCGCTGTGGGCAACAAGGACGACG
TTGTGACTTTCATTGACGCCAAGACACACCGCTCCAAAGCGGAGGAGCAGTTCAAGTTTGAGGTCAATGA
GATCTCATGGAACAACGACAACAACATGTTCTTCCTGACCAACGGCAATGGTTGCATCAACATCCTCAGC
TACCCAGAATTGAAGCCTGTGCAGTCCATCAATGCCCATCCTTCTAACTGCATCTGTATCAAGTTTGACC
CCATGGGGAAATACTTTGCCACAGGAAGTGCAGATGCCTTGGTCAGCCTTTGGGACGTTGACGAGTTAGT
GTGCGTGCGGTGCTTTTCCAGACTAGATTGGCCTGTGAGGACCCTCAGTTTTAGCCACGATGGGAAAATG
CTGGCATCGGCTTCGGAGGACCATTTCATTGATATAGCTGAAGTCGAGACAGGAGACAAGCTATGGGAGG
TGCAGTGTGAGTCCCCGACTTTCACTGTGGCTTGGCACCCCAAGAGGCCTCTGCTGGCTTTTGCCTGTGA
TGACAAAGATGGCAAATACGACAGCAGTCGGGAGGCTGGAACTGTGAAGCTGTTTGGACTTCCCAATGAC
TCCTGA

Translation (351 aa):
MAAPAAVLGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFPAHSAKVHSVAWSCDGRRL
ASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNT
KGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILS
YPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKM
LASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPND
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH