NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3523.1 Public Homo sapiens 4 UGT2B17 24 110 108 CCDS HistoryNCBI Gene:7367Re-query CCDS DB by CCDS ID:3523.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3523.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317746.3 ENSP00000320401.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317746.3Link to Ensembl Protein Viewer:ENSP00000320401.2Re-query CCDS DB by Nucleotide ID:ENST00000317746Re-query CCDS DB by Protein ID:ENSP00000320401
Original member Current member NCBI NM_001077.4 NP_001068.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077.4Link to Protein Sequence:NP_001068.1Re-query CCDS DB by Nucleotide ID:NM_001077Re-query CCDS DB by Protein ID:NP_001068Link to BLAST:NP_001068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001068.1 530 O75795 530 100% 0 0

Chromosomal Locations for CCDS 3523.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 68537625 68537904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68550677 68550896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68551824 68551911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68560537 68560668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68565572 68565720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68567761 68568484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGTCTCTGAAATGGATGTCAGTCTTTCTGCTGATGCAGCTCAGTTGTTACTTTAGCTCTGGGAGTTGTG
GAAAGGTGCTGGTGTGGCCCACAGAATACAGCCATTGGATAAATATGAAGACAATCCTGGAAGAGCTTGT
TCAGAGGGGTCATGAGGTGATTGTGTTGACATCTTCGGCTTCTATTCTTGTCAATGCCAGTAAATCATCT
GCTATTAAATTAGAAGTTTATCCTACATCTTTAACTAAAAATGATTTGGAAGATTTTTTTATGAAAATGT
TCGATAGATGGACATATAGTATTTCAAAAAATACATTTTGGTCATATTTTTCACAACTACAAGAATTGTG
TTGGGAATATTCTGACTATAATATAAAGCTCTGTGAAGATGCAGTTTTGAACAAGAAACTTATGAGAAAA
CTACAAGAGTCAAAATTTGATGTCCTTCTGGCAGATGCCGTTAATCCCTGTGGTGAGCTGCTGGCTGAGC
TACTTAACATACCCTTTCTGTACAGTCTCCGCTTCTCTGTTGGCTACACAGTTGAGAAGAATGGTGGAGG
ATTTCTGTTCCCTCCTTCCTATGTACCTGTTGTTATGTCAGAATTAAGTGATCAAATGATTTTCATGGAG
AGGATAAAAAATATGATATATATGCTTTATTTTGACTTTTGGTTTCAAGCATATGATCTGAAGAAGTGGG
ACCAGTTTTATAGTGAAGTTCTAGGAAGACCCACTACATTATTTGAGACAATGGGGAAAGCTGAAATGTG
GCTCATTCGAACCTATTGGGATTTTGAATTTCCTCGCCCATTCTTACCAAATGTTGATTTTGTTGGAGGA
CTTCACTGTAAACCAGCCAAACCCTTGCCTAAGGAAATGGAAGAGTTTGTGCAGAGCTCTGGAGAAAATG
GTATTGTGGTGTTTTCTCTGGGGTCGATGATCAGTAACATGTCAGAAGAAAGTGCCAACATGATTGCATC
AGCCCTTGCCCAGATCCCACAAAAGGTTCTATGGAGATTTGATGGCAAGAAGCCAAATACTTTAGGTTCC
AATACTCGACTGTATAAGTGGTTACCCCAGAATGACCTTCTTGGTCATCCCAAAACCAAAGCTTTTATAA
CTCATGGTGGAACCAATGGCATCTATGAGGCAATCTACCATGGGATCCCTATGGTGGGCATTCCCTTGTT
TGCGGATCAACATGATAACATTGCTCACATGAAAGCCAAGGGAGCAGCCCTCAGTGTGGACATCAGGACC
ATGTCAAGTAGAGATTTGCTCAATGCATTGAAGTCAGTCATTAATGACCCTATCTATAAAGAGAATATCA
TGAAATTATCAAGAATTCATCATGATCAACCGGTGAAGCCCCTGGATCGAGCAGTCTTCTGGATTGAGTT
TGTCATGCGCCATAAAGGAGCCAAGCACCTTCGGGTCGCAGCCCACAACCTCACCTGGATCCAGTACCAC
TCTTTGGATGTGATAGCATTCCTGCTGGCCTGCGTGGCAACTATGATATTTATGATCACAAAATGTTGCC
TGTTTTGTTTCCGAAAGCTTGCCAAAACAGGAAAGAAGAAGAAAAGGGATTAG

Translation (530 aa):
MSLKWMSVFLLMQLSCYFSSGSCGKVLVWPTEYSHWINMKTILEELVQRGHEVIVLTSSASILVNASKSS
AIKLEVYPTSLTKNDLEDFFMKMFDRWTYSISKNTFWSYFSQLQELCWEYSDYNIKLCEDAVLNKKLMRK
LQESKFDVLLADAVNPCGELLAELLNIPFLYSLRFSVGYTVEKNGGGFLFPPSYVPVVMSELSDQMIFME
RIKNMIYMLYFDFWFQAYDLKKWDQFYSEVLGRPTTLFETMGKAEMWLIRTYWDFEFPRPFLPNVDFVGG
LHCKPAKPLPKEMEEFVQSSGENGIVVFSLGSMISNMSEESANMIASALAQIPQKVLWRFDGKKPNTLGS
NTRLYKWLPQNDLLGHPKTKAFITHGGTNGIYEAIYHGIPMVGIPLFADQHDNIAHMKAKGAALSVDIRT
MSSRDLLNALKSVINDPIYKENIMKLSRIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRVAAHNLTWIQYH
SLDVIAFLLACVATMIFMITKCCLFCFRKLAKTGKKKKRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH