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Report for CCDS52167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52167.1 Public Mus musculus 7 Fam98c 23 108 98 CCDS HistoryNCBI Gene:73833Re-query CCDS DB by CCDS ID:52167.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164589.8 ENSMUSP00000131477.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164589.8Link to Ensembl Protein Viewer:ENSMUSP00000131477.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164589Re-query CCDS DB by Protein ID:ENSMUSP00000131477
Original member Current member NCBI NM_001146023.1 NP_001139495.1 Accepted alive Link to Nucleotide Sequence:NM_001146023.1Link to Protein Sequence:NP_001139495.1Re-query CCDS DB by Nucleotide ID:NM_001146023Re-query CCDS DB by Protein ID:NP_001139495Link to BLAST:NP_001139495.1

Chromosomal Locations for CCDS 52167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29152704 29152847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29153322 29153489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29154419 29154535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29154616 29154693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29155152 29155357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29155675 29155809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29155885 29156030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29156130 29156170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGATGGGGCCATGGTAGCGGGTGACCTTCTGACACTGGGGTACGATGCCCTCCCGGAGGGGGCGTCTC
GGGGTCCCGCGTGTGCAGACTTCAGGGCGCTGTGCGCGCGGCTGGCGGCCGAGCTGACGGCTCTGGGAGC
TCTGGAGCGGCGAGAGGAGGGCACCGCAGTGCTGGGCGCCGGCCACGGCCCGGACACAGAGGAAGAGTTC
CTGCGGCAGTTGGCCGGCTGGCTGCGGGCGTTGCACTGCCCGGATCGCGCGCTCTGCGGCGGAGACTGCG
CCACCGTGCTGCGGGAGCCCGGCGGCGGCCTGCGTCTGCTGCGGTTTCTTTGCTCTGAGCTCCAGGCTGC
CCGCCTCTTGCATCTAAGGCTCCAGCGGGATTCTAGCCCTGTGCCATCCTTTGGAGAAGGGACAAAGAAG
GCGAATGGCGTTGTTCAGGAACTGACGCTAACTCTTCAAGCCCTGGGGCTCCCCAGACCCCTGCGTGGAA
CCCTGGCTAGCCAGCTACTTCGGGAGTTTCATGACAAGATCTCTGAGCTGCTGCCGTCCCTGCCCCCGGA
GTCCATGAAGCCCCTCCTTAACTCGCAGCTGGATGCATCCCGATGGGAAGCCCTGGAGTCTCTGTCCCAA
AGCCTGACAGAGCAGTACTGCTGCCGCCGCTGCCTCCTCCTGAAGCGCCTTGACCTCACAACATCTGCTT
TCCACTGGGGTGACCGGGCAGAGGCCCACGGAGAGGTCATGAAGGCGGTGCTGTCCCCAATCCGAGGGCT
TCTGACTCCAGAATCTGATGTCTCTATCGCACATGTTCTGGCTGCCCGAGCTGACCTTTCCCGCCTGGTC
CCAGCTACCAGTGTGGCTGCCCGACGAGGGACCAGTTGTGCAATCAACAAGGTGCTTATGGGTGATGTGC
CAGACCGTGGGGGGCGCCCCAGTGAGCTGGAAGCTCCCATGCCTACTTGGAAGAGCCGACGAGAAGATGG
AGGAAGGGGGAAGGCTGGCCAACAGCGCTGGGGCCGCAGAAAGAAGAAGAAGTGA

Translation (344 aa):
MDGAMVAGDLLTLGYDALPEGASRGPACADFRALCARLAAELTALGALERREEGTAVLGAGHGPDTEEEF
LRQLAGWLRALHCPDRALCGGDCATVLREPGGGLRLLRFLCSELQAARLLHLRLQRDSSPVPSFGEGTKK
ANGVVQELTLTLQALGLPRPLRGTLASQLLREFHDKISELLPSLPPESMKPLLNSQLDASRWEALESLSQ
SLTEQYCCRRCLLLKRLDLTTSAFHWGDRAEAHGEVMKAVLSPIRGLLTPESDVSIAHVLAARADLSRLV
PATSVAARRGTSCAINKVLMGDVPDRGGRPSELEAPMPTWKSRREDGGRGKAGQQRWGRRKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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