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Report for CCDS40805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40805.1 Public Mus musculus 9 Ttc21a 23 108 98 CCDS HistoryNCBI Gene:74052Re-query CCDS DB by CCDS ID:40805.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035100.5 ENSMUSP00000035100.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035100.5Link to Ensembl Protein Viewer:ENSMUSP00000035100.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035100Re-query CCDS DB by Protein ID:ENSMUSP00000035100
Original member Current member NCBI NM_028735.3 NP_083011.2 Accepted alive Link to Nucleotide Sequence:NM_028735.3Link to Protein Sequence:NP_083011.2Re-query CCDS DB by Nucleotide ID:NM_028735Re-query CCDS DB by Protein ID:NP_083011Link to BLAST:NP_083011.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083011.2 1314 Q8C0S4-1 1314 100% 0 0

Chromosomal Locations for CCDS 40805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119937724 119937750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119939167 119939296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119940416 119940526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119941133 119941299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119942572 119942694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119943817 119943974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119944945 119945029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119945483 119945581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119946619 119946811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119950601 119950698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119950820 119951020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119952155 119952284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119954156 119954313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119954534 119954749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119956834 119957072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119958064 119958136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119958238 119958348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119958687 119958825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119958969 119959075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119961755 119961943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119963181 119963291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119964232 119964313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119965697 119965847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119966013 119966174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119966267 119966459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119966555 119966779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119967196 119967316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119967447 119967514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119967597 119967674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3945 nt):
ATGAGCAGCGATGACTCCTCTCTCATGGCTTCGATCATTTACTACAGCCAGGAAAAGTACTTCCACCATG
TGCTGCAGGCTGCGAATGTGGGCCTAGAGAGGTACAGCAGCGACCCAGCCCTGCAGTTCTTCAGAGCGTA
TGGAATCCTTGGGGAAGACCACATCCACGATGCCATCAGCGAGCTGGAAGGCATCCAAAGCCACCCAGAC
ACGTCCCTGTGCGCGGTCATCGCCCTGCTTTCTGCTCACAAATCCTGCGACACCATCGACATAGAAGCAG
TTCAGGAACTGGAGAGCAGCTTGAAGGAAATTCGCAGGTCAGCCAGCAGCACTGCTCTGTACTACGCCAG
CCTCTTCCTCTGGTTCATGGGTCACCACGACAAGGCCAGGGAGTATGTTGACCACATGTTGAAGGTCTCC
AGCGGCTCCAAAGAGGGCTATGTGCTCAAAGGCTGGGTGGACCTTACCTCCAGTAAACCCCACGTTGTGA
AGAAATCCATCAAGTACCTGGAACAAGGAACTCAAGACACCAAAGATGTGCTAGGGCTCATGGGCAAGGC
AACGTACTTCATGACACAACAGAACTTCTCTGGGGCCCTGGAGGTGGCGAACCAGGTCACCTTGGCCTGC
AGCAACTTCCTGCCCGCTTTAGTCCTGAAGATGAAGCTGTTCCTGGCTCGGCAGGATTGGGATCAGACGA
TAGAAACCGGACAAAGAATCCTTGAAAAAGACGAAAACAATATTGATGCCTGGCAAATTCTAGCTGTGCA
CGAGCTGGTGAAAGAAGGGAACACGGACAGAGCTGCCGACCGGGTCAGAAACCTCATCAAGGCGCTAGAG
ACTGGAGAGCCCCACAATCCAAACCTACATCTTAAGAAGATCCTTGTAATCAGCAGGCTGTGTGGGAGGC
ACCAGGTGGTCCATCGGCTTGTGAGCGGCTTCCTGGAGCGCATCTTTATGGCCACACCTTCCTGTGCCCT
TGTGGCCACAGAGCTGGGCTACCTCTTCATCCTACACCAACAAGTGAAGGAAGCCTGTCTGTGGTACAAG
GAGGCCATGAAGCTGGAGGAGAACAGGCTGGCTGCCTTGGCAGGGAGCATCTGGTGCCAGATCCTACAGG
GCCAGCTGGAGGAGGCTGCTCACCAGCTGGAGTTCCTCAAGGAGGTGCAGCAGTCCCTTGGGAAGTCTGA
GTTGCTGGTTTTCCTGCAAGCCCTCGTAGCAGCTAAGAAGCAAAGGCTGGAGCAGGAGGCCACGGCGCTC
CTGAAGGAGGCGGTGGAAGTGCACTTCTCCAGCATGCAGGGTCTGGCCCTGAGCCCCGAGTACTTTGAAA
AGCTGGACCCCCTCTTTCTGGTCTGCATCGCCAAGGAGTATCTGCATTTCTGCCCCAAGCAGCCCCGGTC
ACCCGGCCAGCTCGTATCTCCACTTCTTAAACAAGTCGCCATGATCTTGAGTCCTGTGGTGAAGGTGGCC
CCGGCCATGATGGAGCCACTGTATGTAACGGCTCAGGTCAAGTTCCTCTCAGGAGAGCTGGAAAATGCGC
AGAGCACCCTGCAGCGCTGCCTGGAGCTGGACCCCACATTTGTGGATGCTCACCTCCTCATGTCCCAGAT
CTACCTGGCCCAGGGCAACTTCGCCATGTGCTCCCATTGCCTAGAGCTGGGTGTCAGCCACAACTTCCAG
GTCCGAGACCATCCCCTCTACCACTTCATCAAAGCCAGGGCCCTCAATAAGACGGGCGACTATGCCGAGG
CCATAAAGACCTTAAAAATGATCATAAAGGTTCCCACCTCGAAGGCAGAAGAGGGCAGGAAGTCCCAAAG
CCCCTCCGTTCGGCCCAGCGAGCGGGCATCCATCCTGCTAGAGCTAGTAGAGGCTCTCCGACTGAATGGG
GAACTGCACGAGGCCACCAAGATCATGCAGGACGCCATCAATGAGTTCAGCGGCACGCCAGAGGAGATGC
GCATCACGGTCGCCAACGTGGACTTGGCTCTGAGCAAGGGCAACGTGGACCTGGCGCTGAACATGTTAAG
AGGTATCACACCCAAGCAACCCTGCTACACAGAAGCCAAGGAGAAGATGGCCAGTATCTACCTGCACACT
CGCAAGGACGTGCGCCTCTACATTGGCTGCTACGTGGAGCTTTGTGAACATCTGCCCGGCCCCCACAGCA
GCCTGCTACTGGGTGACGCTTTCATGAACATTCAGGAGCCTGAGAAGGCCCTGGAGGTGTATGACGAGGC
CTATAGAAAGAACCCTCACGATGCCTCCTTGGTCAGCAGGATCGGACAGGCCTACGTGAAGACCCACCAG
TACGCCAAGGCCATTAATTACTACGAGGCTGCCCAGAAGATCAGCGGGCAGGACTTCCTGTGCTGCGAGC
TGGCCGAGCTCCTCCTCAAGCTGAAGAAATACCACAAGGCAGAGAAGGTGCTGAAGCAGGCCTTGGAGCG
AGACTCAGGGGTCAAGGACATCCCATCCATGATAAATGAGGTCAAGTGCTTGCTTTTGTTGGCAAAGGTT
TACAAGAGCCACAAGAAGGAAGAGGTGATGGAAACCCTGAATCTGGCCTTGGACCTCCAGTCCCGGATAC
TGAAGCGGGTTCCTTTGGAGCAATCAGAAATGATCCCCTTCCAGAATCAGCTGGCAGCCTCCATCTGCAT
CCAGATTGGGGAACATCACCTGGCGGAGAAAGATTACGACAGCGCCCTGAAATCCTATAAGGACGCCCTC
GCCTACTCGCCCACAGACAGTAAGGTGGTGCTGGAGCTGGCCCATCTCTACCTGCTTCTGGGTCAGCTGG
ACCTGTGTGAACAGCGCTGTGCCCCCCTCTTAGAGATGGAGCAGACCCACGAGAGAGCCGCTGTGATGCT
GGCCGACCTGATGTTTAGAAGACAAAACTATGAAACTGCCATCAATCTCTACCACCAAGTGCTGGAGAAA
GCTCCAGACAATTTTTTGGTATTGAATAAACTGGTCGATCTGCTACGACGGAGCGGCAAGCTTGAAGAGG
CCCCTGCTTTCTTTGAACTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAGCCAGGGTTTAACTACTG
CCAAGGCATTTACTTCTGGCACATTGGACAGCCCAATGAAGCCTTGAGGTTTCTGAACAAAGCCCGAAAG
GACAGCACTTGGGGCCAGCTTGCCACCTGTTACATGGTACAGATCTGTCTGAACCCTGACAATGAGATTG
TCGGTGGAGAGGCTTTTGAGAGCCTGGTGGGTGACAGCAACTCTGCCAGTAGAAAGGAGTCTCAGCAGCA
CGGGGTGCGCACTGCAGAGAAGCTACTTCGGGAATTTTACCCACACTCGGAATCCGGGCAGACCCAGCTG
CGGCTGCTGCAGAATCTCTGCCTGCTGGCCACCAGGGAGAAGGCGAATGTAGAGGTGGCTCTGGGAGCCT
TTATCGAGATGGCCCAGGCTGAGAAGGACAGCATCCCTGCACTGCTGGCCATGGCGCAGGCCTACATACT
CCTGAAGCAAGTCCCCAAGGCCCGAACGCAGCTGAAGCGCCTGGCCAAAGTCCCATGGACGGTCGACGAG
GCCGAAGACCTGGAAAAGAGCTGGCTTCTGTTGGCAGATATCTATTGCCAAGGCGGCAAGTTCGACCTGG
CCTTGGAGCTACTGCGCCGATGCCTGCAGTATAACAAGTCTTGCTGCCGGGCCTATGAGTACATGGGCTT
CATCATGGAGAAAGAGCAGTCATACAAGGATGCAGCAACCAACTACGAGCTGGCCTGGAAGTACAGTCAT
CAGGCCAACCCCGCCATTGGTTTCAAACTGGCTTTCAACTACCTGAAAGACAAGAAGTTCGTAGATGCCA
TTGAAGTCTGTCACAGCGTCCTGACGGAGCACCCCAAGTACCCCAAGATCAGGGAGGAGATTTTGGAGAA
AGCCCAAGGGTCCTTGAGGCCCTAG

Translation (1314 aa):
MSSDDSSLMASIIYYSQEKYFHHVLQAANVGLERYSSDPALQFFRAYGILGEDHIHDAISELEGIQSHPD
TSLCAVIALLSAHKSCDTIDIEAVQELESSLKEIRRSASSTALYYASLFLWFMGHHDKAREYVDHMLKVS
SGSKEGYVLKGWVDLTSSKPHVVKKSIKYLEQGTQDTKDVLGLMGKATYFMTQQNFSGALEVANQVTLAC
SNFLPALVLKMKLFLARQDWDQTIETGQRILEKDENNIDAWQILAVHELVKEGNTDRAADRVRNLIKALE
TGEPHNPNLHLKKILVISRLCGRHQVVHRLVSGFLERIFMATPSCALVATELGYLFILHQQVKEACLWYK
EAMKLEENRLAALAGSIWCQILQGQLEEAAHQLEFLKEVQQSLGKSELLVFLQALVAAKKQRLEQEATAL
LKEAVEVHFSSMQGLALSPEYFEKLDPLFLVCIAKEYLHFCPKQPRSPGQLVSPLLKQVAMILSPVVKVA
PAMMEPLYVTAQVKFLSGELENAQSTLQRCLELDPTFVDAHLLMSQIYLAQGNFAMCSHCLELGVSHNFQ
VRDHPLYHFIKARALNKTGDYAEAIKTLKMIIKVPTSKAEEGRKSQSPSVRPSERASILLELVEALRLNG
ELHEATKIMQDAINEFSGTPEEMRITVANVDLALSKGNVDLALNMLRGITPKQPCYTEAKEKMASIYLHT
RKDVRLYIGCYVELCEHLPGPHSSLLLGDAFMNIQEPEKALEVYDEAYRKNPHDASLVSRIGQAYVKTHQ
YAKAINYYEAAQKISGQDFLCCELAELLLKLKKYHKAEKVLKQALERDSGVKDIPSMINEVKCLLLLAKV
YKSHKKEEVMETLNLALDLQSRILKRVPLEQSEMIPFQNQLAASICIQIGEHHLAEKDYDSALKSYKDAL
AYSPTDSKVVLELAHLYLLLGQLDLCEQRCAPLLEMEQTHERAAVMLADLMFRRQNYETAINLYHQVLEK
APDNFLVLNKLVDLLRRSGKLEEAPAFFELAKKVSSRVPLEPGFNYCQGIYFWHIGQPNEALRFLNKARK
DSTWGQLATCYMVQICLNPDNEIVGGEAFESLVGDSNSASRKESQQHGVRTAEKLLREFYPHSESGQTQL
RLLQNLCLLATREKANVEVALGAFIEMAQAEKDSIPALLAMAQAYILLKQVPKARTQLKRLAKVPWTVDE
AEDLEKSWLLLADIYCQGGKFDLALELLRRCLQYNKSCCRAYEYMGFIMEKEQSYKDAATNYELAWKYSH
QANPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHPKYPKIREEILEKAQGSLRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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