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Report for CCDS37259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37259.1 Public Mus musculus 16 Parn 23 108 98 CCDS HistoryNCBI Gene:74108Re-query CCDS DB by CCDS ID:37259.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058884.9 ENSMUSP00000055969.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058884.9Link to Ensembl Protein Viewer:ENSMUSP00000055969.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058884Re-query CCDS DB by Protein ID:ENSMUSP00000055969
Original member Current member NCBI NM_028761.3 NP_083037.1 Accepted alive Link to Nucleotide Sequence:NM_028761.3Link to Protein Sequence:NP_083037.1Re-query CCDS DB by Nucleotide ID:NM_028761Re-query CCDS DB by Protein ID:NP_083037Link to BLAST:NP_083037.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083037.1 624 Q8VDG3 624 99.5192% 0 3

Chromosomal Locations for CCDS 37259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13538850 13538902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13541055 13541248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13566570 13566738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13603028 13603102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13606148 13606234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13607251 13607306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13625509 13625578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13626114 13626224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13628374 13628449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13629583 13629625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13631530 13631573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13640253 13640330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13647243 13647299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13648419 13648499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13650635 13650677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13651798 13651836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13652645 13652710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13654449 13654593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13656916 13656976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13664656 13664737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13664821 13664888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13665902 13665981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13667534 13667611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13668011 13668029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGGAGATAATCCGGAGCAATTTTAAGATTAATCTTCACAAAGTGTACCAGGCCATAGAGGAGGCTGACT
TCTTCGCCATCGATGGGGAGTTTTCAGGAATCAGCAATGGACCCTCAGTAACAGCATTAACAAGTGGTTT
TGACACCCCAGAAGAGAGATATCAGAAGCTTAAAAAGCATTCCATGGACTTTTTGCTGTTTCAGTTTGGC
CTTTGTGCTTTTAAGTATGACCACACAGATTCCAAGCATGTAACGAAGTCATTTAACTTCTATGTTTTCC
CCAAGCCTTTCAGTAGGTCCTCACCAGATGTCAAGTTTGTTTGCCAGAGCTCCAGCATTGACTTCCTGGC
GAGCCAAGGATTTGACTTTAATAAAGTGTTTTGCAGTGGGATTCCATATCTGAATCAGGAAGAAGAAAGG
CAGCTGAGAGAGCAATTCGATGAAAAACGGTCTCAAGCCAATGGGGCAGGAGCTCTGGCAAAATGTCCTG
TGACCATCCCTGAGGATCAGAAGAAGTTTATTGACCAAGTAATAGAGAAGATAGAGGATTTCCTACAAAG
TGAAGAGAAGAGGAGCCTGGAACTTGACCCATGCACTGGGTTCCAAAGAAAACTTATTTATCAGACTTTG
AGTTGGAAGTATCCTAAAGGCATTCATGTTGAGACATTAGAGACTGACAAGAAGGAAAGACATATAGTTA
TCAGCAAGGTGGATGAAGAAGAACGCAAAAGGAGAGAGCAGGAGAAGTACACAAAGGAGCAGGAGGAGCT
GAATGATGCTGTGGGGTTTTCAAGAGTCATCCATGCCATTGCTAATTCGGGGAAGCTGGTTGTGGGACAC
AACATGCTCTTGGATGTCATGCATACGATTCATCAGTTCTACTGCCCCCTGCCTGCGGACCTGAATGAGT
TTAAGGAGATGGCAATATGTGTCTTCCCCAGACTCTTGGATACTAAGTTGATGGCCAGCACACAGCCTTT
TAAGGATATCATTAACAACACATCCCTTGCAGAGTTGGAAAAGCGGTTGAAAGAGACACCTTTTGACCCT
CCCAAAGTTGAAAGTGCAGAAGGCTTTCCAAGCTACGACACAGCTTCTGAGCAGCTTCATGAGGCGGGGT
ACGATGCCTACATCACAGGGCTCTGCTTCATCTCCATGGCAAATTACTTAGGTTCTTTACTCAGTCCTCC
AAAAATGTGTGTGTCTGCCAGATCAAAGCTCATTGAACCCTTTTTTAACAAGTTATTTCTTATGAGGGTC
ATGGATATTCCCTATTTAAACTTGGAAGGGCCAGACTTGCAGCCTAAGCGGGACCATGTTCTCCACGTGA
CCTTCCCCAAAGAGTGGAAAACCAGCGACCTGTACCAGCTCTTCAGCGCCTTCGGTAACATTCAGATATC
CTGGATTGATGATACATCAGCCTTCGTTTCTCTCAGCCAGCCAGAACAAGTACAAATTGCCGTTAATACC
AGCAAGTACGCTGAAAGTTATCGGATCCAGACCTATGCTGAGTATGTGGGAAAGAAGCAGAAAGGCAAGC
AGGTCAAGAGGAAGTGGACAGAAGACAGTTGGAAGGAGGTGGACAGAAAGCGGCCCCACATGCAGGGCCC
CTGTTACCACAGCAACAGCTTCACAGCCGCTGGCATGCTTGGAAAGAGGACGCTGAGTCCCGACCCAAGG
GAAGCTGCCTTGGAGGACAGAGAATCAGAGGAGGTATCTGACTCGGAGCTTGAACAGACAGATTCCTGTA
CAGACCCCCTCCCAGAGGGAAGGAAAAAGTCCAAGAAGTTAAAACGAATGAAGAAGGAGCTTTCCTTGGC
AGGAAGTGTCTCGGATAGCCCTGCCGTGCTCTTTGAAGTCCCTGACACATGGTAG

Translation (624 aa):
MEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFG
LCAFKYDHTDSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEER
QLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTL
SWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGH
NMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDP
PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVSARSKLIEPFFNKLFLMRV
MDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNT
SKYAESYRIQTYAEYVGKKQKGKQVKRKWTEDSWKEVDRKRPHMQGPCYHSNSFTAAGMLGKRTLSPDPR
EAALEDRESEEVSDSELEQTDSCTDPLPEGRKKSKKLKRMKKELSLAGSVSDSPAVLFEVPDTW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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