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Report for CCDS16028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16028.1 Public Mus musculus 2 Rnd3 23 108 98 CCDS HistoryNCBI Gene:74194Re-query CCDS DB by CCDS ID:16028.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017288.8 ENSMUSP00000017288.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017288.8Link to Ensembl Protein Viewer:ENSMUSP00000017288.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017288Re-query CCDS DB by Protein ID:ENSMUSP00000017288
Original member Current member NCBI NM_028810.2 NP_083086.1 Accepted alive Link to Nucleotide Sequence:NM_028810.2Link to Protein Sequence:NP_083086.1Re-query CCDS DB by Nucleotide ID:NM_028810Re-query CCDS DB by Protein ID:NP_083086Link to BLAST:NP_083086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083086.1 244 P61588 244 100% 0 0

Chromosomal Locations for CCDS 16028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 51132294 51132545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51134083 51134217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51137136 51137245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51148224 51148311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51148725 51148874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGAAGGAGAGAAGAGCCAGCCAGAAATTATCCAGTAAATCTATCATGGATCCTAATCAGAACGTGAAAT
GCAAGATAGTAGTAGTGGGCGACAGCCAGTGTGGGAAAACCGCGCTGCTCCACGTCTTCGCCAAGGACTG
CTTCCCAGAAAATTACGTCCCTACGGTGTTTGAGAATTACACTGCCAGTTTTGAAATCGACACACAAAGA
ATAGAGTTGAGCCTGTGGGACACTTCAGGTTCTCCTTACTATGACAACGTCCGTCCACTCTCTTACCCAG
ATTCTGATGCAGTGCTCATTTGCTTTGACATCAGTAGACCAGAGACTCTGGACAGTGTCTTAAAAAAGTG
GAAAGGTGAAATCCAGGAGTTTTGTCCCAATACCAAGATGCTGTTGGTGGGCTGCAAGTCTGATCTGCGG
ACAGATGTCAGCACATTAGTGGAACTCTCAAATCACAGGCAGACTCCTGTGTCATATGACCAGGGGGCAA
ATATGGCCAAGCAGATCGGAGCAGCCACTTACATAGAATGCTCAGCTTTACAGTCAGAAAACAGCGTCAG
AGACATTTTTCACGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAAATCG
CAGAGGGCCACAAAGCGGATTTCGCACATGCCTAGCAGACCAGAACTCTCAGCAGTTGCTACGGACTTAC
GAAAGGACAAAGCGAAGAGCTGTACTGTGATGTGA

Translation (244 aa):
MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQR
IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR
TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNKTNKNVKRNKS
QRATKRISHMPSRPELSAVATDLRKDKAKSCTVM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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