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Report for CCDS15117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15117.1 Public Mus musculus 1 Psmd1 23 108 98 CCDS HistoryNCBI Gene:70247Re-query CCDS DB by CCDS ID:15117.1Re-query CCDS DB by GeneID:70247See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027432.8 ENSMUSP00000027432.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027432.8Link to Ensembl Protein Viewer:ENSMUSP00000027432.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027432Re-query CCDS DB by Protein ID:ENSMUSP00000027432
Original member Current member NCBI NM_027357.2 NP_081633.1 Accepted alive Link to Nucleotide Sequence:NM_027357.2Link to Protein Sequence:NP_081633.1Re-query CCDS DB by Nucleotide ID:NM_027357Re-query CCDS DB by Protein ID:NP_081633Link to BLAST:NP_081633.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081633.1 953 Q3TXS7 953 100% 0 0

Chromosomal Locations for CCDS 15117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86064790 86064805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86070583 86070626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86071614 86071687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86071827 86071996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86075799 86076004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86077356 86077499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86078568 86078794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86082037 86082097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86083147 86083275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86085182 86085270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86086030 86086108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86086575 86086748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86088809 86088920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86089994 86090190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86092003 86092098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86094276 86094340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86116575 86116689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86118510 86118626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86126456 86126558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86128136 86128305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86130637 86130729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86132714 86132800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86133638 86133784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86136963 86137109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGATCACTTCAGCCGCTGGAATTATTTCTCTTCTGGATGAAGAAGAGCCACAGCTTAAGGAATTTGCAC
TACACAAATTGAATGCAGTCGTGAATGACTTCTGGGCAGAGATTTCTGAGTCTGTAGATAAAATAGAAGT
TTTATATGAAGATGAAGGTTTCCGAAGTCGGCAGTTTGCAGCCCTGGTGGCCTCGAAAGTGTTTTATCAC
CTGGGGGCTTTTGAGGAGTCTCTGAATTATGCTCTTGGAGCAGGTGACCTCTTCAACGTCAATGATAACT
CTGAATATGTGGAGACTATTATAGCAAAATGCATTGATCATTATACCAAACAGTGTGTGGAAAATGCAGA
TTTGCCTGAAGGAGAAAAAAAGCCAATTGACCAGCGATTGGAAGGCATCGTGAATAAAATGTTCCAGCGA
TGTCTCGATGATCACAAGTATAAGCAAGCGATTGGCATTGCTCTGGAGACCAGGAGACTGGATGTCTTTG
AGAAGACTATACTGGAATCTAATGATGTCCCAGGAATGCTAGCTTACAGCCTCAAACTCTGCATGTCTTT
AATGCAGAATAAACAGTTTCGGAATAAAGTATTGAGAGTCTTGGTTAAAATCTACATGAACTTGGAAAAG
CCTGATTTCATCAATGTTTGTCAGTGCTTAATTTTCTTAGATGATCCTCAGGCTGTGAGTGATATTTTAG
AAAAACTGGTAAAGGAGGACAACCTGCTGATGGCCTATCAGATTTGTTTTGATTTGTACGAAAGTGCTAG
CCAGCAGTTCTTGTCATCTGTCATCCAGAATCTTCGAACTGTTGGTACCCCTATTGCTTCTGTGCCTGGA
TCTACCAATACGGGGACTGTGCCAGGATCAGAGAAAGACAGTGACCCCATGGAGACGGAGGAGAAGACAG
CCAGTGCAGTGGCTGGGAAGACACCAGATGCGAGTCCAGAGCCCAAGGACCAGACACTGAAAATGATTAA
GATTTTAAGTGGTGAAATGGCTATTGAATTACACCTGCAGTTCCTAATACGAAATAATAACACAGACCTC
ATGATTCTGAAAAACACAAAGGATGCAGTACGAAATTCTGTGTGTCATACAGCAACTGTAATAGCAAACT
CATTCATGCACTGTGGTACTACCAGTGACCAGTTTCTTAGAGATAACTTGGAATGGTTGGCCAGAGCCAC
CAACTGGGCCAAATTTACTGCAACGGCCAGCTTGGGTGTAATCCATAAGGGCCATGAGAAGGAAGCACTA
CAGTTAATGGCAACATACCTTCCTAAGGACACTTCTCCAGGATCAGCCTATCAGGAAGGGGGCGGTCTCT
ATGCATTGGGTCTCATTCATGCCAATCATGGTGGTGACATAATTGACTATCTCCTTAATCAGCTCAAGAA
TGCCAGCAATGATATTGTTCGACATGGAGGCAGCCTGGGCCTTGGTTTGGCTGCAATGGGAACTGCACGT
CAGGATGTGTATGATTTGCTGAAAACAAACCTGTATCAGGATGATGCTGTGACAGGGGAGGCAGCTGGCC
TAGCCTTAGGTTTGGTTATGTTAGGTTCTAAAAATGCCCAGGCGATTGAGGATATGGTTGGCTATGCACA
AGAGACTCAACACGAGAAGATTCTGCGCGGTCTGGCAGTTGGCATTGCGTTAGTGATGTACGGGAGGATG
GAGGAGGCTGATGCTCTCATTGAGTCTCTCTGTCGTGACAAGGACCCAATTCTTAGAAGATCTGGAATGT
ATACTGTAGCCATGGCTTATTGTGGCTCTGGTAACAACAAAGCCATTCGGCGCCTGCTACATGTTGCTGT
AAGTGATGTCAATGATGATGTCAGAAGAGCAGCAGTGGAGTCACTTGGCTTCATTTTGTTCAGGACGCCT
GAACAGTGTCCAAGTGTGGTTTCTTTGTTGTCAGAGAGTTATAACCCTCACGTGCGCTATGGAGCTGCAA
TGGCCCTGGGAATCTGCTGTGCTGGTACAGGAAACAAGGAAGCAATTAATTTACTAGAGCCAATGACCAA
CGACCCTGTGAACTACGTGAGGCAAGGGGCTCTGATAGCTTCAGCTCTCATCATGATCCAACAGACTGAG
ATCACGTGTCCAAAGGTGAATCAGTTCCGGCAGCTGTATTCCAAAGTCATCAATGACAAACATGATGATG
TCATGGCCAAATTTGGCGCTATTCTGGCCCAAGGCATACTGGATGCAGGTGGTCATAATGTCACAATCTC
CTTACAGTCCAGGACTGGGCACACTCATATGCCGTCTGTGGTTGGCGTCCTTGTCTTCACCCAGTTCTGG
TTCTGGTTTCCCCTTTCACACTTCCTGTCATTGGCTTATACTCCTACCTGTGTCATTGGCCTTAACAAGG
ATTTAAAGATGCCGAAAGTTCAATATAAATCAAATTGTAAACCATCCACATTCGCATATCCTGCCCCTCT
GGAAGTACCAAAAGAAAAAGAAAAGGAAAAGGTTTCCACCGCTGTGTTGTCTATTACTGCCAAAGCTAAA
AAAAAAGAAAAAGAAAAAGAAAAAAAGGAGGAGGAGAAGATGGAAGTGGATGAAGCAGAGAAGAAGGAAG
AGAAAGAGAAGAAAAAAGAACCTGAACCAAACTTCCAGCTGTTGGATAATCCAGCACGAGTTATGCCTGC
CCAGCTGAAGGTCTTAAGTATGACAGAGACCTGCAGATACCAGCCTTTTAAACCACTCTCCATCGGGGGC
ATCATAATTCTGAAAGACACCAGCGAAGACGTTGAAGAACTCGTGGAACCCGTGGCAGCACACGGCCCAA
AGATTGAAGAGGAAGAGCAAGAGCCAGAGCCCCCAGAGCCGTTCGAGTATATCGATGACTAA

Translation (953 aa):
MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVASKVFYH
LGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQR
CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEK
PDFINVCQCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPG
STNTGTVPGSEKDSDPMETEEKTASAVAGKTPDASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDL
MILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTAR
QDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRM
EEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTP
EQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTE
ITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFW
FWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK
KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMTETCRYQPFKPLSIGG
IIILKDTSEDVEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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