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Report for CCDS51160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51160.1 Public Mus musculus 4 Spata31g1 23 108 98 CCDS HistoryNCBI Gene:67317Re-query CCDS DB by CCDS ID:51160.1Re-query CCDS DB by GeneID:67317See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030163.11 ENSMUSP00000030163.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030163.11Link to Ensembl Protein Viewer:ENSMUSP00000030163.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030163Re-query CCDS DB by Protein ID:ENSMUSP00000030163
Original member Current member NCBI NM_026088.3 NP_080364.1 Accepted alive Link to Nucleotide Sequence:NM_026088.3Link to Protein Sequence:NP_080364.1Re-query CCDS DB by Nucleotide ID:NM_026088Re-query CCDS DB by Protein ID:NP_080364Link to BLAST:NP_080364.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080364.1 1183 Q3V0E1 1183 100% 0 0

Chromosomal Locations for CCDS 51160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42970015 42970209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42970864 42974220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3552 nt):
ATGGGACTTCTCCAAGGTCAGCTGACCCATGCTCTGGCCTGCAGGCACTGCAGCAGCATTACCTGCCTCC
ATAGTCCAGGGAATCTGGCCATACTAGTCTTGTTCATGGTTTGGCAGATCCGAAGATGGTGGCAGCTCAG
AGGGTGGCAACAGCTTCAGCCCTGGTGCTCTGGAGATAAAATGACACAAGGCAAGGGGCTACAACTTCTG
TACCATTTGGCCTTCTTTGATTGCCTGTGGAAGCAAAAATCAGAGGAGGAGGAAAAGGAGGAAAAGGAAT
GCTTATCTCTGAATCCACTAAAACCGTATCATCTTTCCAAAGACACTCCTATTGGAAACGGATTTTCTAC
AGCCCCACCACACCCATCCTGTAGATCTGAGGGCCGCCCCAGGGCCACAGAGACACAAGAACAAGTACTC
ATACAGTCCCCAAGCCCTTCTAGATCCTTCCCTACTTTCCAGACCCTGACCAACCTACCTGTGAGAAGCA
AGAGAGCTTCAGGGAGCTCCCCGCAGCAGACAAAACTCCAGCTCTTCTCGGGTCTTCCCTCTCTATACAA
TGAGTCCTTGAAGACTATTTTCCTGAGCTCAGATGGTCCCTCTCCACTAAAGTTGTCTATTTGTCCTTCT
GTCTTTTTAAACAAAGTCCCCTTTCCACCTGCGTACAACCTGCTGCTTCCCTGTTACCACTCCTCAACTT
ACTATCCTACCCCTGAAGCCCATATTTTGGAAGATCTGGAAGAAATAGCACCCGGTTCTCAACTAGTCCA
ATCTCCACCTTCCCCTCCTATACCACTGGTATCCTCCAATCTTAAGCCTTTGCTTAAGGGCTACAAGAGA
ATCATACCTGACACAGAGGTACACACACAGTGGTTTACACAGAACAAAGAGGTTCCTTCTGTCTCTGAGA
ATCAAGGTCTGTACCCACAGCCTGAACTCCAAAAATTCAGATCCTCCACATTCTTATATTCATCTGAGGT
CTGGAGGAAGAGGCCAGGGGACCTCAGACTCCATCAACATAATCCAGAATTGCCTTTTGCCTTTCTGTTG
TATCCTTTTAACCCTCAGGAAGTCCTAGATAGGTTTGAGATGCCATGGAGAAACATGAAACAAAATGAAC
ACCCAAAAGCCTCTGAAACTGCAATGCCAACTGCAAGCCCACTCCCAATTTCCCTGACAGAATGCCAGAG
AGTCAACCCCACAGGAGACCTGTCTCAAGTGAAAACTCTCTGCCAAACCACAGTGCAAAAAGAGAACCTT
CAGATCTATGAGCTTCCAATCTCAGCCCCTTGCCAACTCACAGTACCCGTGACTGAAGGGACTGGCCCTC
CAGGAACTCCCCCTGGATATGAAGCTCAGTGGGGCATCCTAGCATATAAAGGCATTCCCCAAGCTTCTGA
CCCCCTAATGCCAGCTTCCTGTCACCCATCAGGTTCTCTGTCAAAAGTAAAAAATGTTAACCCCAAAGAA
AGACTTTCTGCACCTAAGGATGTCAGGGAAAACCTGGGATACAGAGAGCACCCACATGTTTCTAAGTCTC
CAGTGTCAGCGCCATCCCCTCCTCTAGACACCCTGTCAGACTACCAGAGAGAGAATCCCCCAGAGGATGG
GTCTGGATTTAAGCCTCAATGGGAATGCAAAGAAACCTCAGGCAGTCCCTGGGCCTCTGAAACTCCAACC
CTGGACTTCCACGTGGGTTTCTATGAAGCCACACCTATGTGTGTCCCACTGGGATCTGAGGCTCAACTGA
AGGGTACACCTAGTACAGAAAATCTTTGTGTCTATGCTGACATAGTTTCATCTCCTAGCCTTCCCTCTGT
CTCTCTGCCAGACTTTGCAATAATGGGCCCCCAAAGAATCTTATTAGAGTCTAAAGCTTTATGGGAGACA
AAGGAGCAGAAAAAACACCTGTGGACATCTGATTCCTCATGTCCCCATAAAACACCTCTAGCCCCCTTTA
TAGGACCAAAAAGAATCAATACTGTGGATGATGTCCCTAGATCAGAAGCCACAGGGAAGAATACTGACAA
CACAAAGAAATGTTCGTCTTCTGAGCCGCCATTTCTGAACCTCAACCCATCGCCAGCTCTTGTACAGCAA
CCCCTTAGAGTTAGCCCCATAGAGAACCCACTTAAATCTAAAGCTTGGTGTGGGCACATTCAAAGAAAAA
ATAACTTCTTGGCCTCTGAGCTCCCAGCTCAGAGCCTATCCCAGCACCTGCTTGAACCCAGCCCCGAAGG
AGTCTTATCTGACGTTGAGCCTGCTGGAGGGTTCATGAAGAATAAAAACCATTGTGTTTCTGCATCCCCA
GTTTGGGAATGCAGTCCATCTCCAAATTCTGTTCTGAAGTTTCACATAAGTGAACCTTCTGGAGACCAGT
GCAACTGTACGCCTAAGGAGTCAGTAGCAGAGTGGACAAAGGATTCCTGGGCCAATGAACTGCCAGGCTC
CAGCTTTTTCTCTGCTCTGTCACAAGAGCCACATTCTGAAACTGAGCTTGTATGCAGAAATGTACTAGAA
AGAGAAGCCTCCCAGGGCCCCAATCCTCCAGCAGTGAATCCTCCGCAACCAACAGCCTGGCCTATCCAGC
CTGGCCTCTCAGAAGCCAAGGCAGAGGCCCCCTCCTCCCAGGGAGAGGCCGTCTCAGAGGTGTCTGACCA
TCCTGTGATCCACGCCTGGCAGTGGAGTAGACAATTAAAGCTCAGACTGAACAAACTACAGCAGAGCCCC
ACTTTCAAATCCCCAGGTTCACATCACTCATTTTCCAGCTCCCCAGTTCTTAACCTAACTCTAGAATCTT
GGGGACCTTCCTCTTGTTCCCAACAGATGCATCCTCTCAGTCTGCACCCCTGCTCTTCAAGTAGTCATCC
CCCAAAAGTTCAAAGGGCAGAAGCCCTGCCTGTCCAGGCCCCTCATTGCTTGCACTCCTCTTCTCAGCCT
CAGGCACAAGCTTCTGGTAGAGCAGAGCAGCGGTCTCAGAAAAGTAAGAGGCTGAAACGGAAGGCGATGG
TCCAAATCCCATCCCCAGGGCTGGGTCATGTGAAGGCTGATGAGAACTGTTCAGGCATGGGAGAGCCCTC
AGATACAGGGCTTCTGGTCTCTGGTAAGAGACAAGACAAGACTTTAGTACTACTTTCAACCCAAAAGAGA
GGGAGTTCCAGAAAGTCCAAAGCAGAGAAATGTGGAAGGACTGCAAGATTAGGATCACCCACTAACACAA
GGGAAAACAATCCTGCCCAGGCCTGCAGACCAGCAGAGGCCTCTATGCCGAGGTTTTCTAGAAAGTTTGA
GCATAAAGCTCAGAGTTCCCCACATTCGGCCCTTGCTCAGCAGCTTCTCCCAAATGCTGCTGGGCCCCAG
GATCGGCCAAGGACAGGCCTGGTGGCCGGTGAGACCCAGAATCCTTGCCCTTTTAAGTGCTGTCCTTGGA
TTCCAACAAAGCAGCAGCTCTCATCCTTATCACAAGAGGCTCCCCCTACCAGAGGTTTCCAAAAGTTAAT
AGATAAGTTTCTGGGTGTGCATAGACCTCTGCCAACTAAATCCAGTCCGTAA

Translation (1183 aa):
MGLLQGQLTHALACRHCSSITCLHSPGNLAILVLFMVWQIRRWWQLRGWQQLQPWCSGDKMTQGKGLQLL
YHLAFFDCLWKQKSEEEEKEEKECLSLNPLKPYHLSKDTPIGNGFSTAPPHPSCRSEGRPRATETQEQVL
IQSPSPSRSFPTFQTLTNLPVRSKRASGSSPQQTKLQLFSGLPSLYNESLKTIFLSSDGPSPLKLSICPS
VFLNKVPFPPAYNLLLPCYHSSTYYPTPEAHILEDLEEIAPGSQLVQSPPSPPIPLVSSNLKPLLKGYKR
IIPDTEVHTQWFTQNKEVPSVSENQGLYPQPELQKFRSSTFLYSSEVWRKRPGDLRLHQHNPELPFAFLL
YPFNPQEVLDRFEMPWRNMKQNEHPKASETAMPTASPLPISLTECQRVNPTGDLSQVKTLCQTTVQKENL
QIYELPISAPCQLTVPVTEGTGPPGTPPGYEAQWGILAYKGIPQASDPLMPASCHPSGSLSKVKNVNPKE
RLSAPKDVRENLGYREHPHVSKSPVSAPSPPLDTLSDYQRENPPEDGSGFKPQWECKETSGSPWASETPT
LDFHVGFYEATPMCVPLGSEAQLKGTPSTENLCVYADIVSSPSLPSVSLPDFAIMGPQRILLESKALWET
KEQKKHLWTSDSSCPHKTPLAPFIGPKRINTVDDVPRSEATGKNTDNTKKCSSSEPPFLNLNPSPALVQQ
PLRVSPIENPLKSKAWCGHIQRKNNFLASELPAQSLSQHLLEPSPEGVLSDVEPAGGFMKNKNHCVSASP
VWECSPSPNSVLKFHISEPSGDQCNCTPKESVAEWTKDSWANELPGSSFFSALSQEPHSETELVCRNVLE
REASQGPNPPAVNPPQPTAWPIQPGLSEAKAEAPSSQGEAVSEVSDHPVIHAWQWSRQLKLRLNKLQQSP
TFKSPGSHHSFSSSPVLNLTLESWGPSSCSQQMHPLSLHPCSSSSHPPKVQRAEALPVQAPHCLHSSSQP
QAQASGRAEQRSQKSKRLKRKAMVQIPSPGLGHVKADENCSGMGEPSDTGLLVSGKRQDKTLVLLSTQKR
GSSRKSKAEKCGRTARLGSPTNTRENNPAQACRPAEASMPRFSRKFEHKAQSSPHSALAQQLLPNAAGPQ
DRPRTGLVAGETQNPCPFKCCPWIPTKQQLSSLSQEAPPTRGFQKLIDKFLGVHRPLPTKSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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