NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22780.1 Public Mus musculus 8 Map10 23 108 98 CCDS HistoryNCBI Gene:74393Re-query CCDS DB by CCDS ID:22780.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053078.4 ENSMUSP00000061679.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053078.4Link to Ensembl Protein Viewer:ENSMUSP00000061679.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053078Re-query CCDS DB by Protein ID:ENSMUSP00000061679
Original member Current member NCBI NM_028908.3 NP_083184.1 Accepted alive Link to Nucleotide Sequence:NM_028908.3Link to Protein Sequence:NP_083184.1Re-query CCDS DB by Nucleotide ID:NM_028908Re-query CCDS DB by Protein ID:NP_083184Link to BLAST:NP_083184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083184.1 891 Q8BJS7 891 100% 0 0

Chromosomal Locations for CCDS 22780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 125669870 125672545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGGCGACCACGGCGGCCGGGCGGCTCTTCTCGCTGGAGCTGCTCGTGGACTGGGTGCGGCTGGAGACCG
GGCTGTCGCCGTGCGCCGCGAGCCCGGCTGTGGCGTTTCGCCTGCTGGACTTCCCGCCGCTGCTCGTCTT
CCCGCCGGCCGCTCCTGGCCCGGAGCCCCAGCGCGGCGCCATCAGCTTCGGGCGCGGCAAGGCCTGCCTA
CTGCGCCTGCACCCTGCCGCCCTGCGGCGCCCGCGTCTGCGCGCAGCCCTGCTGCAACTGCCCGTGGGCC
CGACTTCTGCGCCCGGCCTGGTGGGAGCTTGCGACATCCTGCTGGTCCCCTCCCTGGGCCAGCGAGGTGT
ATTCGCCCTGCGCGGGCCAGAGGCCGAGCGTGTTGGGGAGCTGGCGCTCTTCTATCGCCTGACCGAACTG
GGACGCTTTTCCCCGGGGGTTCCGCAGCTGCGAGGCCCTCTGAGCCCTGCTTGTATCCTGGACTCCGAAG
CCCTGGAGGTGTCAGAGCCAAGAACCGAGGAGACCTCGAAGCCATGCACCAAAGGCATCTCTGCCAGATG
TCTACAGTGTGTCTCAAATGCACGCCTTCTGGAGGGCTCAGAGCCATGTGCCAAGGATACCAACAGCTGG
TCTGCAGGGGACTCAGACGCCTCAGTTGTCCAGAAGTCCTGGGAAGAAGCGGTCTTACACAGTAAGGCTA
GCTCTGGGGACATGGCTTCTGCCCCTTGTTCACCCGCTCCCAGTGGGAAAACTGTCAGTTCTGTCAGTCA
GGATGTCACAGAACTGGACTTTGAAACCAACACATTTTGCCCTCCTCCACTGTATTACACTCACCTGACT
CAGGAAAAGACTCCTTCAGCCAGGGTTGAAATCACTATTGAGCCTCAGAGAAATGAACCTGAGGATCTAG
ATGACATTTTTCCCGAAACAAAACTCGTAAGTCCTCCCTTAAGGCCAGTGAAACATACAAGAGCTGCAGT
GCAGGAGAGCCCTCCTGTGCTTCCAAATCTTCCTCAGACTCAGGGTCCAGGAGAAGCGAACGAAGCTCCG
TGTCCTCCTCAGATTGAACAAAGTCCAGTCAATGCTATAAGACAGCTGCCACTATTGAATGCTTTATTGA
TTGAGCTGTCCTTGCTGTGCAACCAGCCCGTGGCAAGCCCCACCCAGGTGCATCCCCATTTAGCCTGGTT
GTACAGAGGTGAAGACAAGGGGCCAGACCCTTCCACCAAGTCCACATCCCCGTCGGAATCAAAGAGCAAC
AAGCTTTCTGTGCGAGAAAATGAAAAGTTGGTGAATCCCCAGTCTAAAAAGAACCCTAAAGGAAAACATC
CAAAGATCGGTGGCAGCCCCCCACCAAAGGTTACAAAGGGGAGGCTGCTGTATGGCTTAACAAATACACT
GAGACTGCGTTTACAGCAGACAAACCCCAACATGCTGGTTGTACATGAAAAGAGAGAACAGTACAGGAGG
TCACAGATACAAGCTGTGGGGCCAAAGTTGCGAATCCCCTCCTGGAAAGGGAAGGTGTCAAGCTCAGCAG
CAGAAAGCCAGATGTCACCACAGCTGCCCGCAGATACACCAACAGACTCTAATGGGAAACTACCAAGCTT
GGCAGTTCAAAGCCAGTTGCCACCACAGCTGCCCGGGGATGAATCTTTAGACTCCATTGGGTCTTTTGAG
GAAGGTAGTGATACTTCAATGCAAATCAGGGCAGGCTTTGATGAGTCAAGCACAACTAAAGAAGTGAAAC
AGAGCCATGCCATGAAACAAGAAATGGTTGACCAGAGTGAAAACAGAACCATTGTCACTGCTCTGAGAGC
ACCCGTGAGCCCTGCAGGCTCTGTCACCCCAGAAAGATCTCTTCGATCAAATAGTTTCGGGGGAAACTGG
AAAAACAAAGTCCCAAGCCCAGGGCTTTCCCTACAGGAACCTACTGTTGACAAAACTGTGGATGAGGGGA
AAGATGGTAGGCAAGTCAAAGCCATAAGTGCTGCTGATACAAGTGAAAATAGACCAACCAGTAGAAAAAG
TTCATGCGAGAGCATCTCAGAACTACTGTATCGGGATGGGTTCACCAGCCCTTGTTATTCTGAAGATTTC
TGCACAACTGAGAATAACAGCAGAAGTCTGCCGGCTCCCGACAGCAGCACAGGGGTAGAACATGTGCAAA
AGGGTTCACGGGCAAGCAAGTCAAGTGAGGCAAGGCTGTCCACAAGGAAAAACAGCAGTGACTCGAGTTC
TGTGCTCACCCCTCCCTTTTCTGCTGGCTCACCAGTGTGTTCTCATAAAAGATCCCGTGCACTGAAGATT
CATGATAGTCTGGAGGAAGCATCCAGTCTCTCTACCAGTGACTTTTCATCACAGTGGACAAATGAAAAGG
AAAACCAGGCAGATCCAGGTAGTTCAAAAGTCATGAGGAAAGGACGGGACAGCTCCACTAAACTTAAAGT
AAGAGCTGGTCACAAGTCATCTGAGAAGAGCCAGTCACCAAGGACATCTCAAGTGAGTTCTTACGAGCCA
TCAAATTTGTCTGAGCTAGAACTCAAGGCCATAGATGACAGTGACTTAGCTGATTTCCAAGAAGAAGAAG
ATGGCCTTGGTTCATTGCGCATCTCCAGACAGTGCAAAGACATCTGCGAGTTAGTAATAAATAAACTTCC
AGGATACACAGTGTGA

Translation (891 aa):
MATTAAGRLFSLELLVDWVRLETGLSPCAASPAVAFRLLDFPPLLVFPPAAPGPEPQRGAISFGRGKACL
LRLHPAALRRPRLRAALLQLPVGPTSAPGLVGACDILLVPSLGQRGVFALRGPEAERVGELALFYRLTEL
GRFSPGVPQLRGPLSPACILDSEALEVSEPRTEETSKPCTKGISARCLQCVSNARLLEGSEPCAKDTNSW
SAGDSDASVVQKSWEEAVLHSKASSGDMASAPCSPAPSGKTVSSVSQDVTELDFETNTFCPPPLYYTHLT
QEKTPSARVEITIEPQRNEPEDLDDIFPETKLVSPPLRPVKHTRAAVQESPPVLPNLPQTQGPGEANEAP
CPPQIEQSPVNAIRQLPLLNALLIELSLLCNQPVASPTQVHPHLAWLYRGEDKGPDPSTKSTSPSESKSN
KLSVRENEKLVNPQSKKNPKGKHPKIGGSPPPKVTKGRLLYGLTNTLRLRLQQTNPNMLVVHEKREQYRR
SQIQAVGPKLRIPSWKGKVSSSAAESQMSPQLPADTPTDSNGKLPSLAVQSQLPPQLPGDESLDSIGSFE
EGSDTSMQIRAGFDESSTTKEVKQSHAMKQEMVDQSENRTIVTALRAPVSPAGSVTPERSLRSNSFGGNW
KNKVPSPGLSLQEPTVDKTVDEGKDGRQVKAISAADTSENRPTSRKSSCESISELLYRDGFTSPCYSEDF
CTTENNSRSLPAPDSSTGVEHVQKGSRASKSSEARLSTRKNSSDSSSVLTPPFSAGSPVCSHKRSRALKI
HDSLEEASSLSTSDFSSQWTNEKENQADPGSSKVMRKGRDSSTKLKVRAGHKSSEKSQSPRTSQVSSYEP
SNLSELELKAIDDSDLADFQEEEDGLGSLRISRQCKDICELVINKLPGYTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH