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Report for CCDS52524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52524.1 Public Mus musculus 8 Nkx6-3 23 108 98 CCDS HistoryNCBI Gene:74561Re-query CCDS DB by CCDS ID:52524.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071588.7 ENSMUSP00000071517.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071588.7Link to Ensembl Protein Viewer:ENSMUSP00000071517.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071588Re-query CCDS DB by Protein ID:ENSMUSP00000071517
Original member Current member NCBI NM_029002.2 NP_083278.1 Accepted alive Link to Nucleotide Sequence:NM_029002.2Link to Protein Sequence:NP_083278.1Re-query CCDS DB by Nucleotide ID:NM_029002Re-query CCDS DB by Protein ID:NP_083278Link to BLAST:NP_083278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083278.1 262 Q3UHX8 262 100% 0 0

Chromosomal Locations for CCDS 52524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 23153585 23153969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23156201 23156370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23157582 23157815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGAGTCCAACCTGCAGGGGACCTTCCTCCTGAACAACACACAGCTGGCCCAGTTCTCAGAAATGAAGG
CTCCCATGTGCCAGTACTCGGTGCAGAACTCTTTCTACAAGCTCAGCCCTCCGGGACTTGGCCCCCAGCT
GGCGGCTGGGACTCCCCATGGAATCACTGACATCCTGAGCAGACCGGTTGCCACCCCGAACAGCAGCCTC
CTCTCTGGCTACCCCCACGTGGCAGGCTTTGGTGGACTCAGCTCCCAGGGCGTCTACTATGGCCCCCAGG
TGGGGAGCTTTTCCAAGGCTGGAAATGAGTACCCGACCCGGACCCGGAACTGCTGGGCAGACACAGGCCA
GGACTGGAGAGGCAGCGCTCGGCCATGCAGCAACACTCCAGACCCCCTGAGTGACACTATCCACAAGAAA
AAGCACACCCGCCCTACCTTCACGGGCCACCAGATCTTTGCCCTGGAGAAAACCTTTGAGCAGACCAAGT
ACTTGGCTGGCCCAGAGCGGGCGAGGCTGGCTTATTCCCTGGGCATGACGGAGTCACAGGTCAAGGTGTG
GTTCCAGAACCGCCGGACCAAGTGGAGGAAGAAGAGCGCCCTGGAGCCCTCATCCTCCACACCCCGGGCC
CCGGGAGGTGCGAGCGGGGACCGCGCGGCCTCGGAGAACGAGGACGATGAGTACAACAAGCCGCTGGACC
CGGACTCGGACGACGAGAAGATCCGCCTGCTGCTGCGCAAGCACCGGGCCGCCTTCTCCGTGCTCAGCCT
GGGCGCGCACAGCGTGTGA

Translation (262 aa):
MESNLQGTFLLNNTQLAQFSEMKAPMCQYSVQNSFYKLSPPGLGPQLAAGTPHGITDILSRPVATPNSSL
LSGYPHVAGFGGLSSQGVYYGPQVGSFSKAGNEYPTRTRNCWADTGQDWRGSARPCSNTPDPLSDTIHKK
KHTRPTFTGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKSALEPSSSTPRA
PGGASGDRAASENEDDEYNKPLDPDSDDEKIRLLLRKHRAAFSVLSLGAHSV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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