CCDS Report for Consensus CDS

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Report for CCDS50284.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
50284.1	Public	Mus musculus	18	Lvrn	23	108	98

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50284.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000025358.3	ENSMUSP00000025358.2	Accepted	alive
		NCBI	NM_029008.1	NP_083284.1	Accepted	alive

Chromosomal Locations for CCDS 50284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)

Genome Browser links:

Chromosome	Start	Stop
18	46850192	46850877
18	46864673	46864815
18	46866398	46866537
18	46873782	46873908
18	46876883	46877037
18	46878229	46878342
18	46880618	46880761
18	46881258	46881323
18	46881412	46881477
18	46882204	46882376
18	46884419	46884495
18	46885019	46885158
18	46887116	46887171
18	46889386	46889539
18	46890829	46890923
18	46893673	46893780
18	46894564	46894740
18	46894915	46895052
18	46900483	46900558
18	46905216	46905356

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGAGCCGTCCTTTCAGCTCCGGCGTCTATGTGAGCCGCGGGGTGGCCCTGCTGCTGGCCGCGCTGACAG CCGTGCTCCTGCTGGTGCTAGTGGCTCTGGCTTCCTTGTATGGCAGCTGCGCTCACGTCCAGCCTTCGGA GCAGGGTAACTCCCGGGTGAAGAACACCTCATTGTGGCCTCCCGGCGGCCAGGAGTGGGCGCTACCAACC CCCGCACAGGAGCCCACGGTGGGGACCTCCCAAGACTTGGGACCTCCGTCGGGGCCCTGGGATCATCTGC GCCTGCCTCCCTGGCTTGTCCCACTTCACTATGATCTGGAGCTGTGGCCCTGGCTGCAGCCGGATAAGCT GTCCCCACCGAATTTGACCTTCACGGGTCGCGTGAACATCACGGTACGCTGCACAGTGGCCTCCTCGAGA TTGTTGCTGCATAGCTTCCTTCTGAATTACAAGCAAGTGGAAGTGTGGGGTCCTCTGGCCCAGGACACTA GGAACGCCACTGTAGGCCGCGTGCAGGTGGAGAAAGTGTGGTTTGCGCCGGACATGCAATTCGTGGTGCT GGATCTGGGCCAATCCTTGGAGCCAGGTAGCAGATATGAGCTGAGTTTCCACTTCTCTGGCCAGGTGCTT CAGGTTGGCTTAGAAGGGCTCTTTCTGAACCTCTACCATGATGAAGATGAGCTCAGAGCCCTGGTAGCGA CTCAAATGGAGCCAACATTTGCCAGGCATGTTTTCCCTTGTTTTGATGAGCCAGCTCTAAAGGCAACTTT TAATATTACAGTTATCCATCATCCTGGGTATGCGGCTCTTTCCAATATGCCCCAGCTGGGTCAGTCTGAA AGAATCGATGTGAATGGAAGCAGATGGACTGTCACTACCTTCCATACCACACCCCGCATGCCAACGTACC TTGTTGCCCTTGTTGTGTGTGACTTAGACCACATCAGCAGAACTGAGAGAGGCAAGGAGATACGTGTCTG GGCCCGGAAAGACGACATTGCAAGTGGATATTTAGACTTTGCTGCAAACATCACAGGCCCCATCTTCTCA TTTCTGGAGGATCTGTTTAATATCAGTTATCGGCTTCCAAAAACAGATATAGTTGCCTTGCCTATTTTTG CCAGCGGCGCCATGGAGAACTGGGGCCTGTTGATATTTGACGAATCGTCCCTGCTCCTGGAACCTGAGGA TGAGCTGACGGAGAAAAGAGCTATGATCTTGAGCATCATCGCCCATGAGGTTGGGCACCAGTGGTTTGGA AACCTGGTGACCATGAGCTGGTGGAACAATATCTGGCTCAATGAAGGCTTTGCATCTTATTTTGAACTTG AACTAACTAACTACTTCTATCCTAAAGTTCCCATGAATATGATCTTTTTTTTTACCGTTTTACATGGAAT TCTCGGAGAAGATCATGCCCTGGAGTCTAGAGCTGTGTCCACTGCAGTGGAAAATTTCACAGAAACAAGC GAAATAAACAGACTCTTTGACTTATATACTTACAAGAAGGGAGCATGCATGGCCTGGATGCTTGCTAGTT TCCTGAGCCCGCACTTGTTTATCAACGCACTTAAGTCTTATTTGGAGACATTTTCTTACTCAAATGCTGA GCAAGATGACCTGTGGAGACATATTCAAATGGCTATAGGTGAGCAGAATGTAACTCATTTGCCAGCAACA GTAAAAGGCATAATGGACAGCTGGACACACCGGGGTGGCTTTCCTATCATCACAGTAAATGTGTCTACTG GCGTCGTTAAACAAGAGCCGTTTTATCTTGACAAGGTTGAAAATCAGACCCTTCTAAGCCACAATAGTAC ATGGATTGTCCCTATTTTTTGGATGAAAAATGGAATCCCACAACCTTTAGTCTGGCTAGATAAAAGCAAC ATGATGTTCCCTGGGATGAAACTTTCAGATTCTGACAGTGACTGGGTGATTTTAAACTTCAATGTGACTG GATATTACAGAGTTAATTACGATGAGTTAGGCTGGAAGAAGTTAAGTGAGCAACTTGAAAAGGATCCTAA GGCCATTCCTGTCATTAACAGGCTGCAGCTGGTGAGCGACGCTTTCGCCTTGACTAAAAACAATTACATT GAGATCGAGACGGCACTTGATTTAACCAAATACATTGCCGAAGAAGATGAGATCCTGGTGTGGTTTGAAG TCTTACTGAACTTGATAAACAGGGAAGTTATTTATGATGTGAACAACTATGCTTTATATCCACTATTGAA GAAGTATTTACTAAAGAGATTTAACTCAATATGGAATACTTATTCAGCTATAATTCGAGAAAATGTGGCA TCATTACAAGACAATTATTTATCTCTATTTTCCCTGGAAAGGATTTTTGAAACTGCCTGTTGGTTGGGTC TTGAAGACTGTCTCCAGCTGTCCAGAGAACTCTTCAAAAAATGGACGGCTCATCCAGAGACAGCAATCCC TCCTCAGATTGAAAACGCGGTCCTCTGCAGTGCCGTTGCTCTGGGGAGTGATAAGGACTGGGACTTTTTG TTTAACCTTTACATCAATACGACCGAGGAAGAGGACGAGAGCCGCCGCCGCCGTCTTGTTCACGCAATGA GCTGCAGTAAAGACCCGTGGATACTTAACAGATTTATGGAGTATGCCATCACTGCAGTTTCCTCCAATTT TAGTGAAACAAATATAATAGTTGTTGTAGCAACATCTGAAGTTGGCCGGTACATTGCAAAGGACTTTCTA ATGGACAACTGGGTAGCTGTGACTGAAAGGTATGGAATGGATTGGCTGGATGCTCTAGTGCCTGTCTTAG GGAGGACCGTCAGTACAGATCAGCAGGTCACAGAGTTGCAGCACTTCTTCAGTACTGTGTTGGAAGAGCA CCAGAGGGTTGTGGTTCAAGCCAAATTACAGGCAATGAAGACGAAGAATCTGCAAAACAAGAAGAGAATT GCCAGGGTGGTTGAGTGGCTTCGGAAAAACACGTAA
Translation (991 aa):
MSRPFSSGVYVSRGVALLLAALTAVLLLVLVALASLYGSCAHVQPSEQGNSRVKNTSLWPPGGQEWALPT PAQEPTVGTSQDLGPPSGPWDHLRLPPWLVPLHYDLELWPWLQPDKLSPPNLTFTGRVNITVRCTVASSR LLLHSFLLNYKQVEVWGPLAQDTRNATVGRVQVEKVWFAPDMQFVVLDLGQSLEPGSRYELSFHFSGQVL QVGLEGLFLNLYHDEDELRALVATQMEPTFARHVFPCFDEPALKATFNITVIHHPGYAALSNMPQLGQSE RIDVNGSRWTVTTFHTTPRMPTYLVALVVCDLDHISRTERGKEIRVWARKDDIASGYLDFAANITGPIFS FLEDLFNISYRLPKTDIVALPIFASGAMENWGLLIFDESSLLLEPEDELTEKRAMILSIIAHEVGHQWFG NLVTMSWWNNIWLNEGFASYFELELTNYFYPKVPMNMIFFFTVLHGILGEDHALESRAVSTAVENFTETS EINRLFDLYTYKKGACMAWMLASFLSPHLFINALKSYLETFSYSNAEQDDLWRHIQMAIGEQNVTHLPAT VKGIMDSWTHRGGFPIITVNVSTGVVKQEPFYLDKVENQTLLSHNSTWIVPIFWMKNGIPQPLVWLDKSN MMFPGMKLSDSDSDWVILNFNVTGYYRVNYDELGWKKLSEQLEKDPKAIPVINRLQLVSDAFALTKNNYI EIETALDLTKYIAEEDEILVWFEVLLNLINREVIYDVNNYALYPLLKKYLLKRFNSIWNTYSAIIRENVA SLQDNYLSLFSLERIFETACWLGLEDCLQLSRELFKKWTAHPETAIPPQIENAVLCSAVALGSDKDWDFL FNLYINTTEEEDESRRRRLVHAMSCSKDPWILNRFMEYAITAVSSNFSETNIIVVVATSEVGRYIAKDFL MDNWVAVTERYGMDWLDALVPVLGRTVSTDQQVTELQHFFSTVLEEHQRVVVQAKLQAMKTKNLQNKKRI ARVVEWLRKNT

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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