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Report for CCDS49184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49184.1 Public Mus musculus 12 Tdrd9 23 108 98 CCDS HistoryNCBI Gene:74691Re-query CCDS DB by CCDS ID:49184.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49184.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079009.10 ENSMUSP00000078022.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079009.10Link to Ensembl Protein Viewer:ENSMUSP00000078022.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079009Re-query CCDS DB by Protein ID:ENSMUSP00000078022
Original member Current member NCBI NM_029056.1 NP_083332.1 Accepted alive Link to Nucleotide Sequence:NM_029056.1Link to Protein Sequence:NP_083332.1Re-query CCDS DB by Nucleotide ID:NM_029056Re-query CCDS DB by Protein ID:NP_083332Link to BLAST:NP_083332.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083332.1 1383 Q14BI7-1 1383 100% 0 0

Chromosomal Locations for CCDS 49184.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111971642 111971862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111984999 111985105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111992462 111992559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111993708 111993929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111994444 111994566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111996787 111996867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111997798 111997962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112001724 112001824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112007512 112007576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112013266 112013320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112013482 112013566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112014442 112014499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112015858 112015962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112023242 112023339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112024662 112024793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112025509 112025674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112025775 112025838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112025911 112025974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112026253 112026297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112027095 112027148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112031188 112031304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112032679 112032786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112034582 112034682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112036354 112036527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112039304 112039415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112040425 112040637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112041662 112041751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112042686 112042946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112044286 112044441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112044800 112044870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112046156 112046265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112046956 112047052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112051868 112052006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112063501 112063619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112067603 112067675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112068179 112068280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4152 nt):
ATGTTGCGCAAGCTCACGGTCGACCAGATAAATGACTGGTTCACCATCGGCAAGACGGTGACCAATGTGG
AGCTTCTGGGCTTGCCACCCGCCTTCCCTGCGGAGGCGCCCCGGGAGGAGGTACAGCGCTCGGAGGAGGT
CCCCAATGAGGATCCTACGGCCCAGGCCCAGGTTCCAGTTAAGGCCACAGCACCGGCCAGACCAGCTTCA
ACCTCCGGGAGGTCACTCAGTCAGAGGAGCTCAGAAATGGAGTATATTAACAAATACAGACAACTTGAAG
AACAAGAACTTGATATTTATGGCCAGGATCAGCCACCCAGTGGACCAGGTCTGAGGTCACCATTGGCTAA
GTTAAGTAATGTGGCATGCATCCCAGAGACAACTTATAAATATCCTGATTTGCCTATAAATCGGTGTAAA
GAAGAGGTCATTTCCTTGATAGAAAGCAATTCTGTGGTGATCATACACGGTGCCACAGGAAGCGGCAAGA
GCACACAGCTCCCACAGTACGTGCTAGACCACTACACCCAGCGCTCTGCCTTCTGCAACATCGTAGTCAC
CCAGCCGCGGAAGATAGGGGCCAGCAGCATTGCCAGGTGGATCAGTAAGGAGCGTTCCTGGACGCTGGGT
GGCTTGGTAGGCTATCAGGTAGGGCTGGAGAAAATCGCAACAGAAGACACTAGGTTAATTTACATGACCA
CTGGAGTCCTGCTTCAGAAAATTGTAAGTGCCAAGAGCCTGATGGAGTTCACGCACATCTTCATTGACGA
GGTGCATGAACGGACCGAGGAGATGGATTTCCTGCTCTTGGTCGTCCGTAAACTCTTGAGGACAAATTCA
CGGTTTGTGAAGGTGGTCCTCATGTCTGCCACCATCAACTGCAAGCAGTTTGCAGACTACTTTGCTGTTC
CCGTTCAGAACAAGATGAACCCGGCATATGTTTTTGAAGTGGAAGGCAAGCCCCACGCTATTGAAGAGTA
TTACCTTAATGACTTGGGGCACATTTATCATAGTGGGCTTCCCTACCGTCTGGAGGAGCCAGTGATAACA
AAGGATGTCTATGAAGTTGCTGTCTCTCTCATTCAGATGTTCGATGACCTGGACATGAAAGAGAGCGGGA
ACAAGACCTGGTCCGGGGCGCAGTTTGTGTCGGAGCGGAGCAGCGTGCTGGTGTTCCTGCCAGGTCTGGG
TGAGATCAATTACATGCATGAGCTCCTCACAAACATGATTCACAAAAGGTTACAGGTCTATCCACTCCAT
TCCAGTGTGACTTTAGAAGAACAGAATAACGTATTTTTAAGTCCAGTCCCTGGGTACAGAAAGATTATTC
TGTCAACCAACATCGCAGAGAGTTCTGTCACAGTTCCTGATGTCAAATATGTTATAGATTTCTGTCTGAC
CAGAACTCTGGTTTGTGATGAAGATACAAATTATCAGAGTCTGCGACTAAGCTGGGCTTCCAAGACCAGC
TGTGACCAGAGAAAAGGCCGTGCTGGACGAGTGTCTAAAGGATACTGCTACAGACTGATCCCCAGGGACT
TCTGGGACAGTGCTATCCCTGACCACGTTGTTCCTGAGATGCTGCGCTGTCCGCTGGGAAGCACAATATT
GAAGGTGAAGTTGCTTGACATGGGTGAACCGAGAGCTCTGCTGGCCACCGCCCTGTCTCCGCCCAGCCTG
AGTGACATTGAGCGCACCATTCTTCTGTTAAAGGAGGTTGGTGCACTGGCGGTCAGTGGGCAGAGGGAGG
ACGAGAACCCCCACGATGGCGAGTTGACCTTCCTGGGACGAGTGCTGGCACAGCTCCCTGTCAGCCAGCA
GCTGGGTAAACTCGTTGTGCTGGGACATGTGTTTGGGTGCCTGGATGAGTGTCTCATCATAGCGGCAGCT
CTTTCTCTGAAGAATTTTTTCACGATGCCTTTTCGGCAGCATCTGGATGGATATAGGAACAAAGTGCACT
TCTCAGGTAGCAGCAGGAGTGACTGCCTGGCACTTGTGGAGGCGTTCAGGGCCTGGCAGGCTTGCAGACA
GCGAGGAGAGCTGCGGCGTCCCAAGGATGAGCTTGACTGGGGACGGCTAAATTACATTCAAATAAAGAGA
ATCAGAGAGGTGGCTGAATTATATGAAGAATTGAAGAATAGAATCTCACAGTTCAACATGTTTGTGGGTC
CTCACCATCCCGTCTTGGATCAAGAATATCCTTATAAGCAGCGCTTCATCCTGCAGGTTGTGCTGGCAGG
CGCTTTTTATCCAAACTACTTCACTTTTGGGCAGCCAGATGAGGAGATGGCAGTGAGGGAACTGGCTGGC
AAAGACCCCAAGACAACAGTCGTGCTGAAACACATCCCTCCCTATGGATTTCTTTACTACAAGCAACTGC
AGTCTCTCTTTAGACAGTGTGGTCAAGTCAAGTCCATTGTATTTGATGGTGCAAAAGCATTTGTGGAGTT
TTCACGGAATCCAACAGAAAGATTTAAGACCCTCCCTGCTGTGAACTTGGCAGTCAAGATGTCCCAGTTG
AAAGTGTCCCTAGAGCTCAGTGTCCATGCTGCAGAGGAGATCGAGGGGAAGGTGCAAGGCGGCTCGGTGT
CAAAGCTCAGGAACACAAGGGTGAACGTGGACTTCCAGAAGCAGACGGTGGATCCCATGCAGGTGTCGTT
CAACACCTTGGACAGACCCCGCACCGTTGCAGACCTCCTCCTGACAATCGATGTCACTGAGGTGGTAGAA
GTGGGGCACTTCTGGGGGTACAGGATCGACGAAAGGAATGCAGAGCTGCTGAAACAACTGACTGCTGAGA
TAAACCGCCTAGAGCTGGTCCCTCTGCCTATCCACCCACATCCAGACTTGGTCTGTCTGGCACCTTTTAC
TGATTACAACAAGGAAAGCTACTTTAGAGCTCAAATTCTTTATGTTTCTGGAAATTCCGCTGAGGTATTC
TTTGTAGACTATGGGAATAGGTCTCATGTAGACCTAGATCTCTTGAGGGAGATCCCCTGTCAGTTTTTGG
AGCTTCCATTTCAGGCTTTGGAATTCAAGATTTGCAAAATGCGACCATCAGCAAAGTCTCTCATCTGTGG
CGAGCACTGGAGTGGGGGTGCCCATGGGCGCTTTGCTGCCTTGGTCGGCGGCTGTCCTCTCCTGGTGAAG
GTGTTCTCCATTGTACACAGTGTTCTGCATGTGGACGTGTACCGCTACTCGGGTGCCCAGGATGCTGTCA
ACGTCAGAGATGTTCTCATCAGGGAGGGCTATGCTGAGCTCGCAGAGGAGTCCTATGAGTCAAAACAAAG
CTATGAAGTCCTCAAGGGTTTCTTTGCTAAGTCAGTGGACACCATGCCGGACGGCTCTGTCTCCTCTCCT
CTGAAGGACGATGAGAAGCATCTCCTACGGATTCTGTTGGAGAGCTTTGCCTCCAACCGGCTAGGCGCTC
CGAACTGCAAGGCTGTTCTCCATGGGCCCTTTAACCCTTATGAGCTGAAGTGTCATAGTCTGACCAGAAT
ATCCAAGTTCAGATGTGTGTGGATTGAGAAGGAGAGCATCAATTCTGTCGTCATCAGTGACAGCCCTGCC
GACCTGCACCAGAGGATGCTGGTTGCAGCTTCACTCTCAGTTAACGAGACCGGCTCCACCATGCTCCTGA
GAGAGACCTCCCTGATGCCGCACATCCCAGGCCTCCCAGCGCTCCTCAGCATGCTGTTCGCACCAGTGAT
GGAGCTGAGAGTTGACCGTGAGGGAAAATGTTACACTGGGGTCCTTTGTGGTTTGGGATGGAATTCAGCT
ACAGAGGCCCCTATCCTGCCAGAGCATGACATCGAGCTGGCCTTTGATGTGCGCTTAAACGTGGAGGACA
TCGTTGAGATTAATATTCTCAGGGCTGCTATCAACAAGCTAGTGTGTGATGGGCCAAATGGATCCAAGTA
TCTTGGGCCTGAAAGAATCGCTCAGTTGCAGGAGAATGCACGCCAGAAACTTCTAGGCTTGTTCTGTCGG
TTGAAACCTCGAGAGAAGATTACTCCTCAGTGGCACGAGAAACCCTACGAGTGGAACCAGGTGGATCCAA
GGCTGATCATGGAGCAAGCTGAGCCAGAGGGCAGCCCAGGAAAGAGCACGTCACTGTACCAGCTGCACAC
GCCTGTGGTGCTCAGCCCCTAA

Translation (1383 aa):
MLRKLTVDQINDWFTIGKTVTNVELLGLPPAFPAEAPREEVQRSEEVPNEDPTAQAQVPVKATAPARPAS
TSGRSLSQRSSEMEYINKYRQLEEQELDIYGQDQPPSGPGLRSPLAKLSNVACIPETTYKYPDLPINRCK
EEVISLIESNSVVIIHGATGSGKSTQLPQYVLDHYTQRSAFCNIVVTQPRKIGASSIARWISKERSWTLG
GLVGYQVGLEKIATEDTRLIYMTTGVLLQKIVSAKSLMEFTHIFIDEVHERTEEMDFLLLVVRKLLRTNS
RFVKVVLMSATINCKQFADYFAVPVQNKMNPAYVFEVEGKPHAIEEYYLNDLGHIYHSGLPYRLEEPVIT
KDVYEVAVSLIQMFDDLDMKESGNKTWSGAQFVSERSSVLVFLPGLGEINYMHELLTNMIHKRLQVYPLH
SSVTLEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTS
CDQRKGRAGRVSKGYCYRLIPRDFWDSAIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPSL
SDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLVVLGHVFGCLDECLIIAAA
LSLKNFFTMPFRQHLDGYRNKVHFSGSSRSDCLALVEAFRAWQACRQRGELRRPKDELDWGRLNYIQIKR
IREVAELYEELKNRISQFNMFVGPHHPVLDQEYPYKQRFILQVVLAGAFYPNYFTFGQPDEEMAVRELAG
KDPKTTVVLKHIPPYGFLYYKQLQSLFRQCGQVKSIVFDGAKAFVEFSRNPTERFKTLPAVNLAVKMSQL
KVSLELSVHAAEEIEGKVQGGSVSKLRNTRVNVDFQKQTVDPMQVSFNTLDRPRTVADLLLTIDVTEVVE
VGHFWGYRIDERNAELLKQLTAEINRLELVPLPIHPHPDLVCLAPFTDYNKESYFRAQILYVSGNSAEVF
FVDYGNRSHVDLDLLREIPCQFLELPFQALEFKICKMRPSAKSLICGEHWSGGAHGRFAALVGGCPLLVK
VFSIVHSVLHVDVYRYSGAQDAVNVRDVLIREGYAELAEESYESKQSYEVLKGFFAKSVDTMPDGSVSSP
LKDDEKHLLRILLESFASNRLGAPNCKAVLHGPFNPYELKCHSLTRISKFRCVWIEKESINSVVISDSPA
DLHQRMLVAASLSVNETGSTMLLRETSLMPHIPGLPALLSMLFAPVMELRVDREGKCYTGVLCGLGWNSA
TEAPILPEHDIELAFDVRLNVEDIVEINILRAAINKLVCDGPNGSKYLGPERIAQLQENARQKLLGLFCR
LKPREKITPQWHEKPYEWNQVDPRLIMEQAEPEGSPGKSTSLYQLHTPVVLSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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