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Report for CCDS24071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24071.1 Reviewed, update pending Mus musculus 10 Glt8d2 23 108 98 CCDS HistoryNCBI Gene:74782Re-query CCDS DB by CCDS ID:24071.1See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 24071.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 24071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020485.9 ENSMUSP00000020485.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020485.9Link to Ensembl Protein Viewer:ENSMUSP00000020485.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020485Re-query CCDS DB by Protein ID:ENSMUSP00000020485
Original member NCBI NM_029102.3 NP_083378.2 Updated not alive Link to Nucleotide Sequence:NM_029102.3Link to Protein Sequence:NP_083378.2Re-query CCDS DB by Nucleotide ID:NM_029102Re-query CCDS DB by Protein ID:NP_083378
Current member NCBI NM_029102.4 NP_083378.3 Pending alive Link to Nucleotide Sequence:NM_029102.4Link to Protein Sequence:NP_083378.3Re-query CCDS DB by Nucleotide ID:NM_029102Re-query CCDS DB by Protein ID:NP_083378Link to BLAST:NP_083378.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083378.3 349 Q640P4 349 100% 0 0

Chromosomal Locations for CCDS 24071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 82651349 82651518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82652868 82652980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82654682 82654848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82659513 82659625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82660730 82660814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82662166 82662283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82664625 82664796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82670278 82670370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82672057 82672081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGCACATGGCTTTTCTACGGAAAGTCAATCAAGTGTTGCTGCTTCTTCTGGTCCTGACACTCTGTGGGA
TTCTGTACAAGAAAGTTCATAAGGGAGCCGTGCTTAAGGACAAAGCAGACGTTGATTCCGAGTCCCCCGA
GGACATGGAAGAAGAGATTCCAGTGGTGATCTGTGCAGCAGCAGGGAGAATGGGTGCAGCCATGGCAGCC
ATCAACAGCATTTACAGCAACACCGATGCTAACCTTGTGTTCTACGTAGTGGGGCTACGGAGCACTCTGC
CTCGAATACGAAAATGGATCGAACATTCTAAACTGAGAGAAATAAACTTCAAAATTGTGGAGTTCAATCC
TACAGTCCTCAAGGGGAAGATTAGACCAGACTCATCGAGGCCTGAGCTGCTCCAGCCCCTGAACTTTGTT
CGGTTTTATCTCCCTCTGCTTGTCCACCAGCATGAGAAAGTCATCTATTTGGATGATGATGTTATCGTAC
AAGGCGATATCCAGGAGCTGTATGACACCACCTTGGCTCTGGGCCATGCAGCGGCCTTTTCAGACGACTG
TGACTTACCCTCTGCTCAAGACATCCACCGACTTGTGGGACTACAGAACACATACATGGGCTATCTGGAC
TACCGGAAGAAGACCATAAAGGACCTTGGCATCAGCCCCAGCACCTGCTCATTCAATCCTGGTGTGATTG
TTGCCAACATGACTGAATGGAAACACCAGCGCATCACCAAACAGCTGGAAAAGTGGATGCAGAAGAATGT
GGAAGAAAACCTCTACAGCAGCTCCCTGGGAGGAGGAGTGGCCACTTCTCCCATGCTGATTGTGTTTCAC
GGGAAGTATTCCACCATCAACCCACTGTGGCACATACGGCACCTCGGCTGGAACCCTGATGCAAGATATT
CGGAGCACTTCCTGCAGGAAGCTAAACTACTCCACTGGAATGGAAGACATAAACCCTGGGACTTTCCTAG
TGTTCACAATGACTTATGGGAAAGCTGGTTTGTTCCTGACCCTGCAGGGATCTTTAAACTGCATCACAAT
AGATGA

Translation (351 aa):
MHMAFLRKVNQVLLLLLVLTLCGILYKKVHKGAVLKDKADVDSESPEDMEEEIPVVICAAAGRMGAAMAA
INSIYSNTDANLVFYVVGLRSTLPRIRKWIEHSKLREINFKIVEFNPTVLKGKIRPDSSRPELLQPLNFV
RFYLPLLVHQHEKVIYLDDDVIVQGDIQELYDTTLALGHAAAFSDDCDLPSAQDIHRLVGLQNTYMGYLD
YRKKTIKDLGISPSTCSFNPGVIVANMTEWKHQRITKQLEKWMQKNVEENLYSSSLGGGVATSPMLIVFH
GKYSTINPLWHIRHLGWNPDARYSEHFLQEAKLLHWNGRHKPWDFPSVHNDLWESWFVPDPAGIFKLHHN
R


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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