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Report for CCDS88186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88186.1 Public Mus musculus 11 4930563E22Rik 23 108 98 CCDS HistoryNCBI Gene:75304Re-query CCDS DB by CCDS ID:88186.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066087.4 ENSMUSP00000159068.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066087.4Link to Ensembl Protein Viewer:ENSMUSP00000159068.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000066087Re-query CCDS DB by Protein ID:ENSMUSP00000159068
Original member Current member EBI ENSMUST00000124762.1 ENSMUSP00000159117.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124762.1Link to Ensembl Protein Viewer:ENSMUSP00000159117.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124762Re-query CCDS DB by Protein ID:ENSMUSP00000159117
Original member Current member NCBI NM_001163728.1 NP_001157200.1 Accepted alive Link to Nucleotide Sequence:NM_001163728.1Link to Protein Sequence:NP_001157200.1Re-query CCDS DB by Nucleotide ID:NM_001163728Re-query CCDS DB by Protein ID:NP_001157200Link to BLAST:NP_001157200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157200.1 129 Q8BGJ3 129 100% 0 0

Chromosomal Locations for CCDS 88186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72215331 72215720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGGGCAGGATGGCCTCGCCCCTTAGGAGCAAGTCCTCCGCCCCGCGAGTGGAAAGCACCCGCCACAAGG
AGACATCGACTGTCCGCGTGGAGACGTCGTCCCACCGCGAGGAAACGTCATCCCACCGCGTGGAGACGTC
CTCCCGGCAGGTTCGAACGTCTTCCCGGCAGGTGGAGACCTCCCAGCGCCACCGAGAGGGGCCCTCCCTC
ACCCCCTCCACGAAGCGACTCCCTCAGTTCCTTGAGGTGTCCTCCCAGCACGTGGAAACCTCCTCGCAGT
GCACGGAAACGTCCTCCCGCCACGTCAGGGCGTCGTCATCCCTGAGGGTGGAGACTACTGTGCACCGTGT
TGAGAGCCCAGCCAGGCAGAGTGCCAGAATGGCTCGATGA

Translation (129 aa):
MGRMASPLRSKSSAPRVESTRHKETSTVRVETSSHREETSSHRVETSSRQVRTSSRQVETSQRHREGPSL
TPSTKRLPQFLEVSSQHVETSSQCTETSSRHVRASSSLRVETTVHRVESPARQSARMAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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