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Report for CCDS51046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51046.1 Public Mus musculus 3 Cfap276 23 108 98 CCDS HistoryNCBI Gene:75504Re-query CCDS DB by CCDS ID:51046.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029485.5 ENSMUSP00000029485.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029485.5Link to Ensembl Protein Viewer:ENSMUSP00000029485.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029485Re-query CCDS DB by Protein ID:ENSMUSP00000029485
Original member Current member NCBI NM_029314.1 NP_083590.1 Accepted alive Link to Nucleotide Sequence:NM_029314.1Link to Protein Sequence:NP_083590.1Re-query CCDS DB by Nucleotide ID:NM_029314Re-query CCDS DB by Protein ID:NP_083590Link to BLAST:NP_083590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083590.1 168 Q9DAD0 168 100% 0 0

Chromosomal Locations for CCDS 51046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108537619 108537699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108542488 108542601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108543439 108543554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108544036 108544160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108544577 108544647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGCTTCAGCCTCAGGAAACTTTCTCGAACCCTGCCTTACGCGACGAAGACAAACATTTGGGAAATCTGT
GGGCTTCTAAGAAATCGCTGTATAAGAACCCAGCTCACCTTGCGCAACAGCAGGATCCCTGGAGTCGGCT
CAGCTCAACCCCCACAGCCACGTCCAGAAGTCGAGACACCTTTTTTGATTCTAAGATACCAAAGGATGAC
CTGGACTTCCGCTTAGCAACCTTGTATAACCACCACACTGGGGCATTCAAGAACAAAACTGAGATATTGT
TACACCAGGAGACCATTGAGGATATCCAGGGAACCAAGATCCAGTTTCCTGGAGAATGTTTCCACGCTCC
TTCAGCCCCCATTACTTCCCGGACCACCATCAGGCACTGGATCAACCCTAAGAAAGAGTCCATCCATAGC
ATTCAGGGATCCATAGTGTCTCCTCACACTGCGGCCACCAATGGAGGTTACTCCCGGAAAAATGATGGTG
GCTTCTTCTCCACCTAG

Translation (168 aa):
MLQPQETFSNPALRDEDKHLGNLWASKKSLYKNPAHLAQQQDPWSRLSSTPTATSRSRDTFFDSKIPKDD
LDFRLATLYNHHTGAFKNKTEILLHQETIEDIQGTKIQFPGECFHAPSAPITSRTTIRHWINPKKESIHS
IQGSIVSPHTAATNGGYSRKNDGGFFST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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