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Report for CCDS79675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79675.1 Public Mus musculus 19 Nscme3l 23 108 98 CCDS HistoryNCBI Gene:75555Re-query CCDS DB by CCDS ID:79675.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189704.1 ENSMUSP00000140922.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189704.1Link to Ensembl Protein Viewer:ENSMUSP00000140922.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189704Re-query CCDS DB by Protein ID:ENSMUSP00000140922
Original member Current member NCBI NM_023781.5 NP_076270.3 Accepted alive Link to Nucleotide Sequence:NM_023781.5Link to Protein Sequence:NP_076270.3Re-query CCDS DB by Nucleotide ID:NM_023781Re-query CCDS DB by Protein ID:NP_076270Link to BLAST:NP_076270.3

Chromosomal Locations for CCDS 79675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5502867 5503751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGAGCGTCTCTCCGCCTGGTCACATGTTGCAAAAAACGAGGAGCAGGAGCCACCCTGGTGCCCAGCTAT
GGAGCCCCAGCGACTGCTGCCCGGGTGTCTCTAGAGAGATCGCGAGAGCGTCTGGACACCCTGATGCCTC
GCAGGACACCCCAGGCACCCCGTCGCCAAGCTTTCGTCAGGTCCAGGCCACCTCTGCTCCGGAGCTCTGG
ACCCAGAAGCAGCTGGAGCTTAAGGTGGCAGAGCTGGTGCAGTTCTTGCTGATTAAGGACCAGAGGAAGA
TTCCCATCAAGCAGTCAGGGATCATGAAACATGTCGTCCGAGACTACAAAAACATCTTCCCAGACCTGCT
TAAACTGGCTGCAGAACGGCTCCACTACGTGTTCGGGTACAAGCTGGTGGAACTCGACCCCAAGAGCAAT
GCCTACATCCTCATCAACGCCCTGGAGCCAGTGGGCAAGGATGGTGAACTGAGAGGCTACCAGAGAACGC
CCACCACCGGCCTCCTGATGATTATTTTAGGGCTCATCTTAATGAATGGCCACAGCATCCCAGAAAACGA
TGTCTGGTGTTTTCTACGTCGTTTGGGGGTGTATCCCACCAAGAAGCATTCAGTTTTCGGCTATCCGAAG
AAACTCATTACTGAAGACTTCGTGAAACAGCGTTACCTGGAGTACCGTCGGATACCCCACACAGATCCTG
TGGACTGTGAGCTCCAGTGGGGTCCGCGAGCAAATCTGGAAACCAGCAAGATGAAAGTCCTTAAGTTTGT
AGCCAAAATCCATAATCAAGATCCCAAGGACTGGCCCACTCAGTACTGTGAAGCTTTGGCGGATGAGCAG
CGTAGGGTCAGACCAGAGCCAAATGGTCCAGCTCTGACCTCTTGA

Translation (294 aa):
MSVSPPGHMLQKTRSRSHPGAQLWSPSDCCPGVSREIARASGHPDASQDTPGTPSPSFRQVQATSAPELW
TQKQLELKVAELVQFLLIKDQRKIPIKQSGIMKHVVRDYKNIFPDLLKLAAERLHYVFGYKLVELDPKSN
AYILINALEPVGKDGELRGYQRTPTTGLLMIILGLILMNGHSIPENDVWCFLRRLGVYPTKKHSVFGYPK
KLITEDFVKQRYLEYRRIPHTDPVDCELQWGPRANLETSKMKVLKFVAKIHNQDPKDWPTQYCEALADEQ
RRVRPEPNGPALTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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