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Report for CCDS20488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20488.1 Public Mus musculus 6 Pex26 23 108 98 CCDS HistoryNCBI Gene:74043Re-query CCDS DB by CCDS ID:20488.1Re-query CCDS DB by GeneID:74043See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088561.9 ENSMUSP00000085921.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088561.9Link to Ensembl Protein Viewer:ENSMUSP00000085921.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088561Re-query CCDS DB by Protein ID:ENSMUSP00000085921
Original member Current member EBI ENSMUST00000125633.1 ENSMUSP00000117444.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125633.1Link to Ensembl Protein Viewer:ENSMUSP00000117444.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125633Re-query CCDS DB by Protein ID:ENSMUSP00000117444
Original member Current member NCBI NM_028730.6 NP_083006.1 Accepted alive Link to Nucleotide Sequence:NM_028730.6Link to Protein Sequence:NP_083006.1Re-query CCDS DB by Nucleotide ID:NM_028730Re-query CCDS DB by Protein ID:NP_083006Link to BLAST:NP_083006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083006.1 305 Q8BGI5-1 305 100% 0 0

Chromosomal Locations for CCDS 20488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 121184265 121184482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121185710 121185850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121187259 121187566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121190101 121190247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121193512 121193615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGAAGAGCGACGCCTCGACGTCTGCAGCCCCTTTGAAAGGGCTCGTGGGCCCTCTGCGGAGCAGCGAGC
CCGCGCTCGCCCTCCCCGCTGTGTCCCCCGCGGTGCACCTGCTGGAAGAGGCGTCCGACCTGTTGGTGGT
GCACCTGGACTTCCATGCCGCACTAGAGACTTGCGAACGAGCCTGGCAGAGCCTGGCGGAGGAGCCCGTG
AGTGGCACCATTGTGGAGGTGAAATGCTCCCTGTGTGTGGTGGGGATCCAGGCTCTGGCAGAAATGGATC
GATGGAGAGAAGCCCTGTCCTGGGTCCTCCGGTACTACCAGGTTCCTGAAAAGCTGCCTCCCAAAGTCCT
GGAGCTGTGCATCCTTTTATACAGCAAAATGAAAGAGCCCGGAGCTGTGCTGGATGTGGCCAGTGCCTGG
CTCCAAGATCCAGATAACCAGGGCCTTCCTGATTATGGATCGCTGGCCAGACTCCACGTGTTCCGGCTGC
TGCTACCCTCGGGTCGCTTGTCAGAGGCCGAGGAACTGGCAGTGCGCTCTGCGGCCTTCAGCGAGGAGCA
GCGGGTAGAAGCGCTCCAGGCCATCCACTTAGCACGGCAGCAGCACACGCAAGAGCACACGCAGGAGCAC
TCGGACTCCCAGGAGCCCCAGAAGCTGAGGCAGGAAGGTTCGTTCTCCCAGAAGTTGCTGTCGCTGCTGA
TGCTGCTTCGCCGGCTCTGGGGCTCCGTGGTGAGCCACCTCCTCTCGCAGCCCTTCAGAAAGGGCCTCCT
GGCTGCCTTGATCCTCTGCCTCTTGATTCTACGGTTTGACCCAGCAGCTCCTTCTTCGCTGCCCTTCCTC
TACCAGCTGACCCAGCTCTTCCGCCGGATCCAGAAGGCCACACTTTCTCGGCTCTACCCCCTCGCCCTCC
GGGACTGA

Translation (305 aa):
MKSDASTSAAPLKGLVGPLRSSEPALALPAVSPAVHLLEEASDLLVVHLDFHAALETCERAWQSLAEEPV
SGTIVEVKCSLCVVGIQALAEMDRWREALSWVLRYYQVPEKLPPKVLELCILLYSKMKEPGAVLDVASAW
LQDPDNQGLPDYGSLARLHVFRLLLPSGRLSEAEELAVRSAAFSEEQRVEALQAIHLARQQHTQEHTQEH
SDSQEPQKLRQEGSFSQKLLSLLMLLRRLWGSVVSHLLSQPFRKGLLAALILCLLILRFDPAAPSSLPFL
YQLTQLFRRIQKATLSRLYPLALRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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