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Report for CCDS16961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16961.1 Public Mus musculus 2 Rbm12 23 108 98 CCDS HistoryNCBI Gene:75710Re-query CCDS DB by CCDS ID:16961.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059647.11 ENSMUSP00000050461.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059647.11Link to Ensembl Protein Viewer:ENSMUSP00000050461.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059647Re-query CCDS DB by Protein ID:ENSMUSP00000050461
Original member Current member EBI ENSMUST00000109604.8 ENSMUSP00000105233.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109604.8Link to Ensembl Protein Viewer:ENSMUSP00000105233.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109604Re-query CCDS DB by Protein ID:ENSMUSP00000105233
Original member NCBI NM_029397.3 NP_083673.3 Updated not alive Link to Nucleotide Sequence:NM_029397.3Link to Protein Sequence:NP_083673.3Re-query CCDS DB by Nucleotide ID:NM_029397Re-query CCDS DB by Protein ID:NP_083673
Current member NCBI NM_029397.4 NP_083673.3 Accepted alive Link to Nucleotide Sequence:NM_029397.4Link to Protein Sequence:NP_083673.3Re-query CCDS DB by Nucleotide ID:NM_029397Re-query CCDS DB by Protein ID:NP_083673Link to BLAST:NP_083673.3
Original member NCBI NM_170598.2 NP_733486.2 Updated not alive Link to Nucleotide Sequence:NM_170598.2Link to Protein Sequence:NP_733486.2Re-query CCDS DB by Nucleotide ID:NM_170598Re-query CCDS DB by Protein ID:NP_733486
Current member NCBI NM_170598.3 NP_733486.2 Accepted alive Link to Nucleotide Sequence:NM_170598.3Link to Protein Sequence:NP_733486.2Re-query CCDS DB by Nucleotide ID:NM_170598Re-query CCDS DB by Protein ID:NP_733486Link to BLAST:NP_733486.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083673.3 992 Q8R4X3 992 100% 0 0
NP_733486.2 992 Q8R4X3 992 100% 0 0

Chromosomal Locations for CCDS 16961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156095372 156098350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2979 nt):
ATGGCTGTGGTCATCCGTTTGCAAGGTCTCCCAATTGTGGCGGGGACCATGGACATTCGCCACTTCTTCT
CTGGATTAACCATCCCCGATGGGGGCGTGCATATTGTAGGGGGTGAACTGGGTGAGGCTTTCATCGTTTT
TGCCACTGATGAAGATGCAAGGCTTGGTATGATGCGCACAGGTGGTACTATTAAAGGGTCAAAAGTAACA
CTATTATTGAGTAGTAAAACAGAAATGCAAAATATGATTGAACTGAGTCGTAGGCGTTTTGAAACTGCCA
ACTTAGATATTCCGCCAGCAAATGCTAGTAGATCAGGACCACCACCTAGCTCAGGGATGAGCAGCAGGGT
GAACTTGCCAGCAATAGTACCCAACTTTAATAATCCTTCGCCAAGTGTAGTAACTGCTACCACTTCTGTT
CATGAGAGCAACAAAAACATACAGACATTTTCCACAGCCAGCGTAGGAACCGCTCCTCCAAGCATGGGGA
CTTCTTTTGGGAGCCCAACGTTCAGTTCAACCATTCCAAGTACAGCTTCTCCAATGAACACGGTCCCACC
GCCACCGATTCCTCCAATCCCAGCGATGCCATCTTTGCCACCGCTGCCATCCATTCCCCCAATACCAGTT
CCTCCTCCGGTACCAACATTGCCTCCTGTGCCACCTGTTCCTCCCATTCCCCCAGTCCCTTCGGTGCCAC
CTATGACCACACTGCCTCCTATGTCAGGCATGCCACCCTTGAATCCACCACCTGTGGCACCTTTACCTGC
TGGAATGAATGGCTCTGGAGCACCTATCGGTCTGAACAATAATATGAATCCTGTGTTTCTGGGTCCATTA
AATCCTGTTAACTCTATACAGATGAATTCTCAAAGCAGCGTGAAGTCTCTTCCCATCAACCCTGATGATC
TGTATGTGAGTGTGCATGGAATGCCCTTTTCTGCAATGGAAAATGATGTCAGAGAGTTTTTCCATGGGCT
CCGAGTCGATGCAGTGCATTTGTTAAAAGATCATGTAGGTCGAAATAATGGGAATGGATTGGTTAAGTTT
CTCTCCCCTCAAGATACATTTGAAGCTTTGAAACGGAACAGAATGCTGATGATTCAACGCTATGTGGAAG
TCAGTCCTGCCACAGAGAGACAGTGGGTAGCTGCTGGAGGTCATATCACTTTTAAGCAAAGTATGGGGCC
TTCTGGACAAGCCCACCCTCCTCCACAGACACTTCCAAGGTCAAAATCGCCCAGTGGGCAGAAAAGGTCA
AGATCAAGATCACCACATGAGGCTGGCTTTTGTGTTTACTTAAAAGGGCTACCATTTGAAGCAGAAAACA
AACATGTCATTGATTTTTTTAAGAAGTTGGATATTGTGGAAGATAGTATTTATATAGCTTATGGACCCAA
TGGGAAAGCAACTGGTGAAGGCTTTGTAGAATTTAGGAATGATGCTGACTATAAGGCTGCTCTCTGTCGT
CATAAACAATACATGGGCAATCGCTTTATTCAAGTTCATCCAATAACTAAGAAAGGTATGCTTGAAAAGA
TAGATATGATTCGAAAACGACTTCAGAACTTCAGCTATGACCAGAGGGAACTGGTGTTAAATCCAGAGGG
GGAAGTCAGTTCTGCCAAAGTCTGTGCCCATATAACAAACATTCCATTCAGCATCACCAAGATGGATGTT
CTTCAGTTCCTAGAAGGAATCCCAGTGGATGAGAGTGCTGTGCATGTTCTTGTTGATAACAATGGGCAAG
GTCTAGGGCAAGCATTGGTTCAGTTTAAAACTGAAGATGACGCACATAAATCTGAACACTTACACCGTAA
AAAGCTGAATGGGAGAGAAGCTTTTGTTCATATAGTTACCCTAGAAGATATGAGAGAGATTGAGAAAAAT
CCCCCAGCCCAAGGAAAAAAGGGTCTAAAGATATCTGTTCCAGGTAATCCTGCAGTACCAGTGATACCTA
GTGCAGGGATGCCTGCTGCTGGAATTCCCACTGCCGGGATACCAGGGGCTGGATTGCCTAGTGCTGGAAT
GCCTGGTGCTGGGATGCCCAGCTCTGGAATGCCTGGTCCTGGAATGCCCGGTCCCGGAATACCCGGTGCG
GGAATACCTGGTCCCGCAATGCCTGGTCCTGCAATGCCTGGTCCCGCAATGCCTGGTCCCGCAATGCCCG
GTCCCGCAATGCCCGGTCCCGCAATGCCCGGTCCCGCAATGCCCGGTCCCGCAATGCCCGGTCCCGCAAT
ACCTGGTCCCGCAATACCTGGTCCCGCAATACCTGGTGCTGGCATCCCCAGTGCAGGAGGAGAAGAGCAT
GTCTTCTTGACTGTAGGATCAAAGGAGGCCAATAATGGGCCACCATTTAACTTCCCTGGTAATTTTGGTG
GGCCCAATGCCTTTGGGCCACCACTCCCCCCTCCAGGATTAGGGGGTGCCTTTGGTGATGTTAGGCCTGT
TATGCCTTCGGTTGGAAATAGTGGTTTGCCTGGCCTAGGACTGGAAGTTCCAGGTTTTGGAGGTGCACCA
AATAATATAAGTGGGCCATCAGGATTTGGGGGGATCCCTCAGAACTTTGGAAATGGCCCAGGTAGTTTAA
ATGCTCCTCCTGGTTTTGGAAGTGGACCCCCTGGTCTTGGAAGTGTTCCTGGGCATTTGAGTGGGCCTCC
AGCCTTTGGGCCTGGGCCTGGGCCTGGCCCAATCCATATTGGGGGTCCCCCTGGCTTTGGAGCTAGCTCT
GGAAAACCAGGACCTACAATAATTAAGGTGCAGAACATGCCTTTTACTGTATCTATTGATGAAATTTTAG
ATTTCTTTTATGGTTATCAAGTAATTCCAGGTTCAGTATGTTTAAAATACAATGAAAAAGGTATGCCTAC
AGGTGAAGCCATGGTGGCCTTTGAATCTCGGGATGAAGCCACAGCTGCTGTCATTGACTTAAATGATAGG
CCTATAGGTTCAAGAAAGGTAAAACTTGTTTTAGGGTAG

Translation (992 aa):
MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRTGGTIKGSKVT
LLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLPAIVPNFNNPSPSVVTATTSV
HESNKNIQTFSTASVGTAPPSMGTSFGSPTFSSTIPSTASPMNTVPPPPIPPIPAMPSLPPLPSIPPIPV
PPPVPTLPPVPPVPPIPPVPSVPPMTTLPPMSGMPPLNPPPVAPLPAGMNGSGAPIGLNNNMNPVFLGPL
NPVNSIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKF
LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRS
RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR
HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKVCAHITNIPFSITKMDV
LQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMREIEKN
PPAQGKKGLKISVPGNPAVPVIPSAGMPAAGIPTAGIPGAGLPSAGMPGAGMPSSGMPGPGMPGPGIPGA
GIPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAIPGPAIPGPAIPGAGIPSAGGEEH
VFLTVGSKEANNGPPFNFPGNFGGPNAFGPPLPPPGLGGAFGDVRPVMPSVGNSGLPGLGLEVPGFGGAP
NNISGPSGFGGIPQNFGNGPGSLNAPPGFGSGPPGLGSVPGHLSGPPAFGPGPGPGPIHIGGPPGFGASS
GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR
PIGSRKVKLVLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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