NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36848.1 Under review, update Mus musculus 14 Dcp1a 23 108 98 CCDS HistoryNCBI Gene:75901Re-query CCDS DB by CCDS ID:36848.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022535.8 ENSMUSP00000022535.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022535.8Link to Ensembl Protein Viewer:ENSMUSP00000022535.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022535Re-query CCDS DB by Protein ID:ENSMUSP00000022535
Original member Current member EBI ENSMUST00000225196.1 ENSMUSP00000152897.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225196.1Link to Ensembl Protein Viewer:ENSMUSP00000152897.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225196Re-query CCDS DB by Protein ID:ENSMUSP00000152897
Original member NCBI NM_133761.3 NP_598522.3 Updated not alive Link to Nucleotide Sequence:NM_133761.3Link to Protein Sequence:NP_598522.3Re-query CCDS DB by Nucleotide ID:NM_133761Re-query CCDS DB by Protein ID:NP_598522
Current member NCBI NM_133761.4 NP_598522.4 Pending alive Link to Nucleotide Sequence:NM_133761.4Link to Protein Sequence:NP_598522.4Re-query CCDS DB by Nucleotide ID:NM_133761Re-query CCDS DB by Protein ID:NP_598522Link to BLAST:NP_598522.4

Chromosomal Locations for CCDS 36848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30479622 30479816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30482193 30482233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30484459 30484586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30502826 30502892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30505546 30505684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30512984 30513097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30518919 30519677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30521590 30521655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30522728 30522946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30523226 30523306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGCACTTTCCTGTTCCACAGTCCGCCCCCGCCGGAGGGGCTCGGCTCTGAGATCCAAGATGGAGTTGT
TGAGTCGAGCTGAGCAAGAGATGAGTCTGGCGGCCTTGAAACAACACGACCCCTATATCACCAGCATCGC
AGACCTCACGGGCCAGGTCGCCCTGTACACTTTCTGCCCCAAAGCCAACCAGTGGGAGAAGACTGATATA
GAAGGGACGTTATTTGTATACCGAAGGTCAGCTTCGCCTTACCATGGCTTTACCATTGTCAACCGACTGA
ACATGCACAATCTGGTTGAGCCAGTGAATAAAGATTTGGAATTTCAGCTCCATGAACCATTTCTTCTGTA
TAGAAATGCAAGTTTGTCAATATACAGTATCTGGTTCTATGACAAGAATGACTGTCATCGCATAGCAAAA
CTCATGGCTGATGTGGTAGAAGAGGAGACACGGCGATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCA
GCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGATGCTGAGCCGGGCCAAGGATGA
GTATGAGAGGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGCCAAGCACTCAGCTCTCT
AATCTGGGAAGCACCGAGACTCTAGAAGAGACACCCTCTGGGTCACAGGATAAGTCTGCTCCGTCTGGTC
ATAAACATCTGACAGTAGAAGAGTTATTTGGAACCTCCTTGCCAAAGGAACAACCAACAGCTATGGGTCT
AGAGTCAGAGGACACAGACAAGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGCTCATTCCTCCCATTT
CCCTTTGAGCAGTCAGGGGGAGCCCCTCAGTCTGAAAACCTGGGTATCCATTCTGCCGCTCACCACACAG
TTCAGCCTGAAGTCAGCACCCCAGTGCTGATCACTCCCGCCTCCATTGCACAGTCGGGTGACAAACATCC
CCCAAGCTACACACTCCCACTGAGCCCTGTCCTCAGCCCCACTCTGCCAGCTGAAGCTCCTACCACACAA
GTTCCCCACTTACCTCGGAATAGCACCATGATACAAGCAGTAAAGACCACACCCAGGCAGAAATCTCCAC
TCCTGAACCAGCCAGTCCCTGAGCTAAGCCACAGCAGTCTGGTTGCTAGCCAGAGCCCCTTCAGAGCCCC
GGTGAGCCTAGCAAACCCAGCTGGCACAGCCCTCCCAAGCGTTGATCTGCTTCAGAAACTCAGGTTGACC
CCACAGCATGACCAAATACAAGCACAGCCGCTTGGAAAAGGAACCATGGCGCCCAGCTTTTCTTCGGCAG
CTGGCCAACTGGCCACCCCTGAGAGCTTCATAGAGCCTTCTTCTAAGACAGCAGCAGCAAGAGCAGCAGT
CTCAGCCTCCCTGAGCAACATGGTGCTTGCTCCAACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGAA
GTATTTTCCCAGCCTAAGGTGTTACCCAGTGCCATCCCGATTGCAGGCTCTCCATTGGTTCCTGCAACCA
CCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTGTGTTCCAGCAAACGGTTCCCAGGGCCGCAGACCT
AGAGAGGAAAGCCAGCTCCCCCTCTCCCCTCACTGTTGGGACAGCAGAGAGTCAGAGAAAGCCTTCCATT
ATCCTCAGCAAGTCTCAGCTCCAGGACACACTGATACACCTAATAAAGAATGACTCCAGCTTCCTCAGTA
CGCTTCATGCAGTTTACTTGCAGGTTCTGACCAAGAACAAAGACAACCACAACCTATGA

Translation (602 aa):
MALSCSTVRPRRRGSALRSKMELLSRAEQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDI
EGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
LMADVVEEETRRSQQAARDKQSPSQANGCSDQRPIDILEMLSRAKDEYERNQMGGSNISSPGLQPSTQLS
NLGSTETLEETPSGSQDKSAPSGHKHLTVEELFGTSLPKEQPTAMGLESEDTDKLLGDASQKEPSSFLPF
PFEQSGGAPQSENLGIHSAAHHTVQPEVSTPVLITPASIAQSGDKHPPSYTLPLSPVLSPTLPAEAPTTQ
VPHLPRNSTMIQAVKTTPRQKSPLLNQPVPELSHSSLVASQSPFRAPVSLANPAGTALPSVDLLQKLRLT
PQHDQIQAQPLGKGTMAPSFSSAAGQLATPESFIEPSSKTAAARAAVSASLSNMVLAPTLQSMQQNQDPE
VFSQPKVLPSAIPIAGSPLVPATTTAVSSVLLSPSVFQQTVPRAADLERKASSPSPLTVGTAESQRKPSI
ILSKSQLQDTLIHLIKNDSSFLSTLHAVYLQVLTKNKDNHNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH